View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208A_low_439 (Length: 216)

Name: NF8208A_low_439
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208A_low_439
NF8208A_low_439
[»] chr5 (2 HSPs)
chr5 (21-133)||(6958693-6958805)
chr5 (149-205)||(6958609-6958665)
[»] chr4 (2 HSPs)
chr4 (21-114)||(30575291-30575384)
chr4 (21-114)||(23007023-23007116)


Alignment Details
Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 6958805 - 6958693
Alignment:
Q  21 atatattgaattcaaagaatatgctagctactgctcataaatttgtagactttgatttcaattagttttcagcataaaatttcaatctttaaaatgataa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6958805 atatattgaattcaaagaatatgctagctactgctcataaatttgtagactttgatttcaattagttttcagcataaaatttcaatctttaaaatgataa 6958706  T
Q  121 tatctacacgaac 133  Q
    |||||||||||||    
T  6958705 tatctacacgaac 6958693  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 6958665 - 6958609
Alignment:
Q  149 gattagagtatagtagagtaagtacctgaagagttgaatcaccactaattgtaacta 205  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6958665 gattagagtatagtagagtaagtacctgaagagttgcatcaccactaattgtaacta 6958609  T

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Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 30575291 - 30575384
Alignment:
Q  21 atatattgaattcaaagaatatgctagctactgctcataaatttgtagactttgatttcaattagttttcagcataaaatttcaatctttaaaa 114  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30575291 atatattgaattcaaagaatatgctagctactgctcatgaatttgaagactttgatttcaattagttttcagcataaaacttcaatctttaaaa 30575384  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 23007023 - 23007116
Alignment:
Q  21 atatattgaattcaaagaatatgctagctactgctcataaatttgtagactttgatttcaattagttttcagcataaaatttcaatctttaaaa 114  Q
    ||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  23007023 atatattgaattcaaagaatatgcttgctactgctcatgaatttgaagactttgatttcaattagttttcggcataaaacttcaatctttaaaa 23007116  T

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