View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208A_low_446 (Length: 213)

Name: NF8208A_low_446
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208A_low_446
NF8208A_low_446
[»] chr6 (13 HSPs)
chr6 (38-154)||(1831964-1832080)
chr6 (49-172)||(6465202-6465325)
chr6 (38-152)||(6473218-6473332)
chr6 (39-172)||(6526241-6526374)
chr6 (39-119)||(6457295-6457375)
chr6 (38-95)||(13035917-13035974)
chr6 (38-129)||(1839061-1839150)
chr6 (71-154)||(1827215-1827298)
chr6 (39-87)||(1822322-1822370)
chr6 (67-128)||(1845847-1845908)
chr6 (51-140)||(6516295-6516384)
chr6 (38-76)||(1827168-1827206)
chr6 (61-137)||(1841986-1842062)
[»] chr7 (4 HSPs)
chr7 (54-140)||(46383318-46383404)
chr7 (42-127)||(3754007-3754092)
chr7 (42-118)||(4046155-4046231)
chr7 (51-117)||(46383849-46383914)


Alignment Details
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 38 - 154
Target Start/End: Original strand, 1831964 - 1832080
Alignment:
Q  38 cgggtttggaatttataatgaccatcattatcatttaggatactttctctttggaattacagtgcttgcaaacattgatccaatttggggtacgaagtat 137  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||   |||||    
T  1831964 cgggtttggaattaataacgaccatcattatcatttaggatactttctctttggaattgcagtgcttgcaaagattgatccaatttggggtagagagtat 1832063  T
Q  138 aagccttacgcctattc 154  Q
    |||||| | ||||||||    
T  1832064 aagcctcaagcctattc 1832080  T

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Target: chr6; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 49 - 172
Target Start/End: Complemental strand, 6465325 - 6465202
Alignment:
Q  49 tttataatgaccatcattatcatttaggatactttctctttggaattacagtgcttgcaaacattgatccaatttggggtacgaagtataagccttacgc 148  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||| | ||||||||||| ||||||||||||||||||| ||||||||||||| | ||    
T  6465325 tttataatgatcatcattatcatttaggatactttctctatggaattgctgtgcttgcaaagattgatccaatttggggtaggaagtataagcctcaagc 6465226  T
Q  149 ctattctcttacggcggattttat 172  Q
     ||||| || | ||| ||||||||    
T  6465225 ttattcactcatggctgattttat 6465202  T

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Target: chr6; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 38 - 152
Target Start/End: Original strand, 6473218 - 6473332
Alignment:
Q  38 cgggtttggaatttataatgaccatcattatcatttaggatactttctctttggaattacagtgcttgcaaacattgatccaatttggggtacgaagtat 137  Q
    |||||| |||||||||||||| ||||||||||||||||| |||||||||| ||||||| |||||||||| || ||||||||| ||||||||| ||| |||    
T  6473218 cgggttcggaatttataatgatcatcattatcatttaggttactttctctatggaattgcagtgcttgctaagattgatccagtttggggtaagaaatat 6473317  T
Q  138 aagccttacgcctat 152  Q
    |||||| | ||||||    
T  6473318 aagcctcaagcctat 6473332  T

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Target: chr6; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 39 - 172
Target Start/End: Complemental strand, 6526374 - 6526241
Alignment:
Q  39 gggtttggaatttataatgaccatcattatcatttaggatactttctctttggaattacagtgcttgcaaacattgatccaatttggggtacgaagtata 138  Q
    ||||| ||| |||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||| || |||||||| ||||||||||  |||||||    
T  6526374 gggttcggagtttataatgatcatcattatcatttaggatactttctctatggaattgcagtgcttgctaagattgatcctatttggggtagaaagtata 6526275  T
Q  139 agccttacgcctattctcttacggcggattttat 172  Q
    || || | ||||||||| | | ||| ||||||||    
T  6526274 agtctcaagcctattctgtcatggctgattttat 6526241  T

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Target: chr6; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 6457375 - 6457295
Alignment:
Q  39 gggtttggaatttataatgaccatcattatcatttaggatactttctctttggaattacagtgcttgcaaacattgatcca 119  Q
    ||||| || ||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||    
T  6457375 gggttcggtatttataatgatcatcattatcatttaggatactttctctatggaattgcagtgcttgcaaagattgatcca 6457295  T

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Target: chr6; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 13035917 - 13035974
Alignment:
Q  38 cgggtttggaatttataatgaccatcattatcatttaggatactttctctttggaatt 95  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  13035917 cgggtttggaatttataatgaccatcattatcatttaggttactttctctatggaatt 13035974  T

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Target: chr6; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 38 - 129
Target Start/End: Original strand, 1839061 - 1839150
Alignment:
Q  38 cgggtttggaatttataatgaccatcattatcatttaggatactttctctttggaattacagtgcttgcaaacattgatccaatttggggta 129  Q
    |||||||||||||||| |||| |||||||||||||||||||| |||||||   ||||| ||||||   |||| |||||||||||||||||||    
T  1839061 cgggtttggaatttatgatgagcatcattatcatttaggatagtttctctaatgaattgcagtgc--acaaagattgatccaatttggggta 1839150  T

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Target: chr6; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 1827215 - 1827298
Alignment:
Q  71 tttaggatactttctctttggaattacagtgcttgcaaacattgatccaatttggggtacgaagtataagccttacgcctattc 154  Q
    ||||||||||||||||| | ||||| ||||||||||||| |||||| ||||||||||||  || ||||||||| | ||||||||    
T  1827215 tttaggatactttctctatcgaattgcagtgcttgcaaagattgattcaatttggggtagaaaatataagcctcaagcctattc 1827298  T

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Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 1822322 - 1822370
Alignment:
Q  39 gggtttggaatttataatgaccatcattatcatttaggatactttctct 87  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||    
T  1822322 gggttttgaatttataatgaccatcattatcatttagaatactttctct 1822370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 1845847 - 1845908
Alignment:
Q  67 atcatttaggatactttctctttggaattacagtgcttgcaaacattgatccaatttggggt 128  Q
    |||||||| ||||||||||||  | |||| ||||||||||||| ||||||||||||||||||    
T  1845847 atcatttacgatactttctctacgaaatttcagtgcttgcaaagattgatccaatttggggt 1845908  T

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Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 140
Target Start/End: Original strand, 6516295 - 6516384
Alignment:
Q  51 tataatgaccatcattatcatttaggatactttctctttggaattacagtgcttgcaaacattgatccaatttggggtacgaagtataag 140  Q
    |||||||| ||||||||||| |||||||| ||||| | ||||||| |||||||||  || |||||||||   ||||||| ||||||||||    
T  6516295 tataatgatcatcattatcaattaggatattttctttatggaattgcagtgcttgttaagattgatccagcatggggtaggaagtataag 6516384  T

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Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 1827168 - 1827206
Alignment:
Q  38 cgggtttggaatttataatgaccatcattatcatttagg 76  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  1827168 cgggtttggaatttataacgaccatcattatcatttagg 1827206  T

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Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 1841986 - 1842062
Alignment:
Q  61 atcattatcatttaggatactttctctttggaattacagtgcttgcaaacattgatccaatttggggtacgaagtat 137  Q
    |||| ||||||||| | |||||||||| ||||||| || ||| ||| || |||||||||||||||| ||| ||||||    
T  1841986 atcaatatcatttaagttactttctctatggaattgcattgcatgctaagattgatccaatttgggatacaaagtat 1842062  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 46383404 - 46383318
Alignment:
Q  54 aatgaccatcattatcatttaggatactttctctttggaattacagtgcttgcaaacattgatccaatttggggtacgaagtataag 140  Q
    ||||| |||||||||||||||||||| | ||||| ||||||||||||||| || || |||||||| |||||||||| ||||||||||    
T  46383404 aatgatcatcattatcatttaggatattctctctatggaattacagtgctcgccaagattgatcctatttggggtaggaagtataag 46383318  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 3754007 - 3754092
Alignment:
Q  42 tttggaatttataatgaccatcattatcatttaggatactttctctttggaattacagtgcttgcaaacattgatccaatttgggg 127  Q
    ||||||||||||||||| ||||||||||||||||| || ||||| | ||||||| | || |||||||| ||||||||| |||||||    
T  3754007 tttggaatttataatgatcatcattatcatttaggttattttctttatggaattgctgttcttgcaaagattgatccattttgggg 3754092  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 4046231 - 4046155
Alignment:
Q  42 tttggaatttataatgaccatcattatcatttaggatactttctctttggaattacagtgcttgcaaacattgatcc 118  Q
    |||||||| |||||||| ||||||||||||||||| || ||||| | |||||||  ||| |||||||| ||||||||    
T  4046231 tttggaatgtataatgatcatcattatcatttaggttattttctttatggaattggagttcttgcaaaaattgatcc 4046155  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 46383914 - 46383849
Alignment:
Q  51 tataatgaccatcattatcatttaggatactttctctttggaattacagtgcttgcaaacattgatc 117  Q
    |||||||| |||||| ||||||||||||| ||||||| ||||||| | |||||||| || |||||||    
T  46383914 tataatgatcatcatcatcatttaggatattttctctatggaattgc-gtgcttgctaagattgatc 46383849  T

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