View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8208A_low_449 (Length: 211)
Name: NF8208A_low_449
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_449 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 36397368 - 36397182
Alignment:
| Q |
15 |
ggacatcaatttaaaacataagcattctttatattgaatgtagtgtgacttgtaaaggacaaaaatagaattataaacactaaacagacaatctggattg |
114 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36397368 |
ggacatgaatttaaaacataagcattctttatattgaatgtagtgtgacttgtaaaggacaaaaatagaattataaacactaaacagacaatttggattg |
36397269 |
T |
|
| Q |
115 |
tgtagtgaaaatctagcagaagaacttatgccatgccaattcatttaagaacaatcaagtgctattctatttctgatatattcttcg |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36397268 |
tgtagtgaaaatctagcagaagaacttatgccatgccaattcatttaagaacaatcaagtgctattctatttctgatattttcttcg |
36397182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University