View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_450 (Length: 211)
Name: NF8208A_low_450
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_450 |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 9e-63; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 38447171 - 38447296
Alignment:
| Q |
20 |
ctggtgtaaaaaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaaaatcgctcgcga |
119 |
Q |
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| T |
38447171 |
ctggtgtaaaaaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtttggtggattcaaatggtctaaaatcgctcgcga |
38447270 |
T |
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| Q |
120 |
ggtatttttgttcatgttttactttc |
145 |
Q |
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| T |
38447271 |
ggtatttttgttcatgttttactttc |
38447296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 26033543 - 26033464
Alignment:
| Q |
28 |
aaaaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaa |
107 |
Q |
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| T |
26033543 |
aaaaagggtccatttagtgaagaagaagaaacaaaagtttttgtgttctataaaaagtatggtgaattcaaatggtctaa |
26033464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 38180713 - 38180792
Alignment:
| Q |
28 |
aaaaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaa |
107 |
Q |
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| T |
38180713 |
aaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaa |
38180792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 38190418 - 38190339
Alignment:
| Q |
28 |
aaaaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaa |
107 |
Q |
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| T |
38190418 |
aaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaa |
38190339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 38207937 - 38208016
Alignment:
| Q |
28 |
aaaaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaa |
107 |
Q |
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| T |
38207937 |
aaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaa |
38208016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 38217643 - 38217564
Alignment:
| Q |
28 |
aaaaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaa |
107 |
Q |
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| T |
38217643 |
aaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaa |
38217564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 38456073 - 38456152
Alignment:
| Q |
28 |
aaaaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaa |
107 |
Q |
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| T |
38456073 |
aaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaa |
38456152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 38342478 - 38342593
Alignment:
| Q |
30 |
aaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaaaatcgctcgcgagg--tatttt |
127 |
Q |
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||||||||||||||| |||||||||||| | ||| ||||| ||||| | |||| ||||| |||||||||||||| || |||| ||||| |||||| |
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| T |
38342478 |
aaagggtccatttagcaaagaagaagaagaaaaattctttgagttattttctaagtttggtgagttcaaatggtctaagatggctctcgaggtatatttt |
38342577 |
T |
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| Q |
128 |
tgttcatgttttactt |
143 |
Q |
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|||||||| ||||||| |
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| T |
38342578 |
tgttcatgctttactt |
38342593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 38446671 - 38446786
Alignment:
| Q |
30 |
aaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaaaatcgctcgcgagg--tatttt |
127 |
Q |
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||||||||||||||| |||||||||||| | ||| ||||| ||||| | |||| ||||| |||||||||||||| || |||| ||||| |||||| |
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| T |
38446671 |
aaagggtccatttagcaaagaagaagaagaaaaattctttgagttattttctaagtttggtgagttcaaatggtctaagatggctctcgaggtatatttt |
38446770 |
T |
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| Q |
128 |
tgttcatgttttactt |
143 |
Q |
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|||||||| ||||||| |
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| T |
38446771 |
tgttcatgctttactt |
38446786 |
T |
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