View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208A_low_453 (Length: 210)

Name: NF8208A_low_453
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208A_low_453
NF8208A_low_453
[»] chr2 (16 HSPs)
chr2 (12-185)||(30514947-30515125)
chr2 (23-181)||(41461028-41461181)
chr2 (23-157)||(30761739-30761868)
chr2 (56-181)||(12041605-12041725)
chr2 (32-104)||(13193917-13193989)
chr2 (39-181)||(27301483-27301620)
chr2 (23-181)||(28790452-28790605)
chr2 (56-100)||(12884548-12884592)
chr2 (34-181)||(17762688-17762830)
chr2 (55-181)||(5862646-5862767)
chr2 (56-181)||(1330956-1331076)
chr2 (23-71)||(42785612-42785660)
chr2 (139-181)||(15320673-15320715)
chr2 (35-88)||(20985896-20985949)
chr2 (21-105)||(30759624-30759713)
chr2 (92-181)||(44979816-44979905)
[»] chr3 (21 HSPs)
chr3 (23-179)||(2832372-2832533)
chr3 (32-103)||(27054094-27054165)
chr3 (33-180)||(55467635-55467777)
chr3 (29-181)||(42363210-42363361)
chr3 (35-101)||(25465821-25465887)
chr3 (23-105)||(37045327-37045408)
chr3 (51-183)||(54121965-54122092)
chr3 (51-104)||(44650982-44651035)
chr3 (97-181)||(2566382-2566466)
chr3 (51-103)||(4554705-4554757)
chr3 (23-103)||(45629212-45629292)
chr3 (23-103)||(20846491-20846575)
chr3 (23-174)||(38651977-38652117)
chr3 (92-174)||(50562617-50562699)
chr3 (51-104)||(8557969-8558022)
chr3 (34-103)||(50578997-50579065)
chr3 (23-105)||(10481623-10481710)
chr3 (42-104)||(38680824-38680886)
chr3 (56-104)||(4280298-4280346)
chr3 (32-68)||(8557945-8557981)
chr3 (92-180)||(32880248-32880336)
[»] chr4 (24 HSPs)
chr4 (29-181)||(5122373-5122520)
chr4 (33-179)||(36106412-36106554)
chr4 (32-105)||(48338358-48338431)
chr4 (23-89)||(18319549-18319615)
chr4 (23-89)||(18399066-18399132)
chr4 (51-181)||(23120268-23120393)
chr4 (23-105)||(15723899-15723986)
chr4 (100-181)||(10218625-10218706)
chr4 (92-173)||(10778520-10778601)
chr4 (51-104)||(19753532-19753585)
chr4 (51-104)||(19786221-19786274)
chr4 (117-186)||(29335186-29335255)
chr4 (32-104)||(18396347-18396419)
chr4 (25-104)||(28147798-28147877)
chr4 (34-68)||(29335108-29335142)
chr4 (28-69)||(1566073-1566114)
chr4 (130-171)||(5061293-5061334)
chr4 (56-105)||(21069063-21069112)
chr4 (23-60)||(23449972-23450009)
chr4 (97-181)||(6333263-6333347)
chr4 (97-181)||(31301242-31301326)
chr4 (36-68)||(35233294-35233326)
chr4 (92-180)||(43630525-43630613)
chr4 (56-104)||(49640866-49640914)
[»] chr8 (19 HSPs)
chr8 (23-104)||(40436455-40436536)
chr8 (51-181)||(33565901-33566028)
chr8 (77-172)||(30254163-30254258)
chr8 (23-100)||(9012820-9012897)
chr8 (92-181)||(36910378-36910467)
chr8 (32-100)||(19539400-19539468)
chr8 (97-181)||(28073243-28073327)
chr8 (51-170)||(31497610-31497734)
chr8 (122-181)||(22811250-22811309)
chr8 (34-111)||(31497588-31497670)
chr8 (51-104)||(6591246-6591299)
chr8 (51-180)||(44336719-44336844)
chr8 (51-104)||(6616941-6616994)
chr8 (59-104)||(7428452-7428497)
chr8 (92-181)||(10661100-10661189)
chr8 (92-181)||(11218896-11218985)
chr8 (51-104)||(36340771-36340824)
chr8 (59-115)||(12660275-12660331)
chr8 (97-181)||(33068212-33068296)
[»] chr1 (24 HSPs)
chr1 (56-181)||(6248023-6248148)
chr1 (32-180)||(9962139-9962282)
chr1 (25-103)||(18310019-18310097)
chr1 (101-181)||(35980443-35980523)
chr1 (130-181)||(3935403-3935454)
chr1 (51-181)||(21685553-21685678)
chr1 (92-181)||(1161789-1161878)
chr1 (92-181)||(51252462-51252551)
chr1 (51-181)||(11074410-11074534)
chr1 (56-181)||(2490044-2490164)
chr1 (32-104)||(8165538-8165615)
chr1 (32-105)||(32910361-32910434)
chr1 (56-105)||(34914151-34914200)
chr1 (122-174)||(8268610-8268662)
chr1 (32-100)||(19051131-19051199)
chr1 (97-177)||(24629898-24629978)
chr1 (23-181)||(12973506-12973664)
chr1 (122-181)||(27507568-27507627)
chr1 (51-101)||(24629964-24630014)
chr1 (71-133)||(50952061-50952122)
chr1 (139-180)||(39127421-39127462)
chr1 (28-69)||(39158306-39158347)
chr1 (43-104)||(50471245-50471306)
chr1 (51-95)||(35992617-35992661)
[»] chr5 (15 HSPs)
chr5 (23-181)||(27572023-27572181)
chr5 (51-171)||(6594929-6595049)
chr5 (92-166)||(2588936-2589010)
chr5 (51-181)||(41454805-41454935)
chr5 (32-101)||(6633341-6633410)
chr5 (56-104)||(36567740-36567788)
chr5 (32-103)||(14652472-14652543)
chr5 (92-181)||(17085284-17085373)
chr5 (92-181)||(30265838-30265927)
chr5 (51-104)||(35240835-35240888)
chr5 (139-182)||(333371-333414)
chr5 (28-90)||(18432113-18432180)
chr5 (35-100)||(563899-563964)
chr5 (51-104)||(17132101-17132154)
chr5 (54-173)||(23411630-23411750)
[»] chr7 (15 HSPs)
chr7 (23-109)||(37375337-37375423)
chr7 (28-104)||(48642798-48642879)
chr7 (12-102)||(46147236-46147326)
chr7 (32-179)||(23032622-23032769)
chr7 (36-98)||(22701316-22701378)
chr7 (140-182)||(2661809-2661851)
chr7 (92-181)||(27054779-27054868)
chr7 (34-100)||(20306632-20306699)
chr7 (23-181)||(32942057-32942215)
chr7 (97-179)||(5932644-5932726)
chr7 (32-90)||(23729420-23729478)
chr7 (51-104)||(33434130-33434183)
chr7 (51-104)||(35820098-35820151)
chr7 (97-177)||(24361546-24361625)
chr7 (50-102)||(34751008-34751060)
[»] scaffold0013 (2 HSPs)
scaffold0013 (97-181)||(128583-128667)
scaffold0013 (92-181)||(105976-106065)
[»] scaffold0204 (1 HSPs)
scaffold0204 (32-105)||(25880-25953)
[»] chr6 (10 HSPs)
chr6 (32-182)||(13859375-13859520)
chr6 (49-108)||(4562871-4562930)
chr6 (92-182)||(892388-892478)
chr6 (51-165)||(32190681-32190790)
chr6 (92-181)||(10494428-10494517)
chr6 (51-104)||(11417074-11417127)
chr6 (51-181)||(13532295-13532418)
chr6 (55-160)||(30752498-30752597)
chr6 (92-181)||(35040257-35040346)
chr6 (55-104)||(7170112-7170161)
[»] scaffold0059 (1 HSPs)
scaffold0059 (92-181)||(69587-69676)
[»] scaffold0470 (1 HSPs)
scaffold0470 (51-104)||(6259-6312)
[»] scaffold0664 (1 HSPs)
scaffold0664 (32-68)||(6055-6091)
[»] scaffold0029 (1 HSPs)
scaffold0029 (87-181)||(40627-40721)
[»] scaffold0015 (1 HSPs)
scaffold0015 (51-104)||(62418-62471)


Alignment Details
Target: chr2 (Bit Score: 111; Significance: 3e-56; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 12 - 185
Target Start/End: Original strand, 30514947 - 30515125
Alignment:
Q  12 tcgaataatatcgcaacaatcgatccaacccaaaccgtattgg-----tttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaacta 106  Q
    ||||| || |||||||||| ||||| |||||||||||||||||     |||||||||||||||||||||||||||||||||| ||| | ||| |||||||    
T  30514947 tcgaaaaaaatcgcaacaaccgatcaaacccaaaccgtattggtttggtttggtttggtttgaattttaattttaaagtcaatcaaccaaaatcaaacta 30515046  T
Q  107 aaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacaccttaa 185  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||    
T  30515047 aaccacgtgattttatatcttgtggttcagaagacttttagtctcaaaatcaaacaaaactgcaccgcgaacaccttaa 30515125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 23 - 181
Target Start/End: Complemental strand, 41461181 - 41461028
Alignment:
Q  23 cgcaacaatcgatccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgattttat 122  Q
    |||| ||| |||| ||| |||||||| ||||||||||||||||| |||||||| ||| |||||||||| |||||||||     ||||| |||  |||| |    
T  41461181 cgcaccaaccgattcaatccaaaccgcattggtttggtttggttcgaattttattttaaaagtcaaccgaaccaaacc-----aaaccgcatactttttt 41461087  T
Q  123 atcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    | |||| ||||| |  |||||||||||| |||| | |||||||| ||||||| ||||||    
T  41461086 agcttgcggttcggttgacttttagtctaaaaaccgaaccaaactgcaccgcgaacacc 41461028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 157
Target Start/End: Original strand, 30761739 - 30761868
Alignment:
Q  23 cgcaacaatcgatccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgattttat 122  Q
    |||| ||| ||||| |||||||| || |||||||||||||||||||||||||| ||| |||||||||  || |||| |     ||||| |||| |||| |    
T  30761739 cgcatcaaccgatctaacccaaatcgcattggtttggtttggtttgaattttattttaaaagtcaacataatcaaaac-----aaaccgcatgttttttt 30761833  T
Q  123 atcttgtggttcagaagacttttagtctcaaaatc 157  Q
    |||||||| |||||| ||||||||  |||||||||    
T  30761834 atcttgtgattcagatgacttttaacctcaaaatc 30761868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 181
Target Start/End: Original strand, 12041605 - 12041725
Alignment:
Q  56 ttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaa 155  Q
    ||||||||||| | |||||| ||| |||||||||| ||||||| |||||     | |||| |||| ||||||  |||||||| ||||||||| |||||||    
T  12041605 ttggtttggttcggattttattttaaaagtcaaccgaaccaaatcaaac-----cgcatgtttttttatcttacggttcagatgacttttagcctcaaaa 12041699  T
Q  156 tcaaaccaaaccgcaccgcaaacacc 181  Q
     | ||||||||| |||||||||||||    
T  12041700 ccgaaccaaaccacaccgcaaacacc 12041725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 13193989 - 13193917
Alignment:
Q  32 cgatccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaac 104  Q
    ||||||||||||||| | ||||||||| ||||||| | |||||| ||| |||||||||| |||||||||||||    
T  13193989 cgatccaacccaaactgcattggtttgatttggttcggattttattttaaaagtcaaccgaaccaaaccaaac 13193917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 181
Target Start/End: Original strand, 27301483 - 27301620
Alignment:
Q  39 acccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgattttatatcttgtggttcagaa 138  Q
    |||||||||| |||||||||||||||||  ||||||| ||| |||||||||| || ||||||     ||||| |||| |||| ||||||| ||| | ||     
T  27301483 acccaaaccgcattggtttggtttggttcaaattttattttaaaagtcaaccgaatcaaacc-----aaaccgcatgcttttttatcttgcggtccggat 27301577  T
Q  139 gacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    | |||||| |||||||| | |||||||| ||| ||| ||||||    
T  27301578 ggcttttaatctcaaaaccgaaccaaactgcagcgcgaacacc 27301620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 181
Target Start/End: Complemental strand, 28790605 - 28790452
Alignment:
Q  23 cgcaacaatcgatccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgattttat 122  Q
    |||| ||| |||||| |||||||||  ||||||||||||||||||| |||||| ||| |||||||||| || | || |     ||||| |||| |||| |    
T  28790605 cgcaccaaccgatccgacccaaaccacattggtttggtttggtttggattttattttaaaagtcaaccgaatctaatc-----aaaccgcatgctttttt 28790511  T
Q  123 atcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    |||||| |||||||| ||||||||   ||||||   |||||||||||||| | ||||||    
T  28790510 atcttgcggttcagatgacttttaacatcaaaactgaaccaaaccgcaccacgaacacc 28790452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 12884592 - 12884548
Alignment:
Q  56 ttggtttggtttgaattttaattttaaagtcaaccaaaccaaacc 100  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  12884592 ttggtttggtttgaattttattttaaaagtcaaccaaaccaaacc 12884548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 181
Target Start/End: Complemental strand, 17762830 - 17762688
Alignment:
Q  34 atccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgattttatatcttgtggtt 133  Q
    |||||| |||||||  || |||||| ||||||| | |||||| ||| |||||||||| |||||||||     ||||| |||| |||| ||||| | ||||    
T  17762830 atccaatccaaaccacatcggtttgatttggttcggattttattttaaaagtcaaccgaaccaaacc-----aaaccgcatgtttttttatctcgcggtt 17762736  T
Q  134 cagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    | |  ||||||||| ||||||| ||||| ||||| |||||| ||||||    
T  17762735 cggttgacttttagcctcaaaaccaaacaaaaccacaccgcgaacacc 17762688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 55 - 181
Target Start/End: Original strand, 5862646 - 5862767
Alignment:
Q  55 tttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaa 154  Q
    |||||||||||| | |||||| ||| |||||||||| |||||||||||||     | |||  |||| ||| ||| | || ||| ||||||||  ||||||    
T  5862646 tttggtttggttcggattttattttaaaagtcaaccgaaccaaaccaaac-----cgcatacttttttattttgcgatttagatgacttttaccctcaaa 5862740  T
Q  155 atcaaaccaaaccgcaccgcaaacacc 181  Q
    |||||| ||||||||||||| ||||||    
T  5862741 atcaaatcaaaccgcaccgcgaacacc 5862767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 181
Target Start/End: Complemental strand, 1331076 - 1330956
Alignment:
Q  56 ttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaa 155  Q
    ||||||||||||| |||||| ||| |||||||||| ||||||||||| ||      |||| |||| || |||||||||| || || |||| |||| ||||    
T  1331076 ttggtttggtttggattttattttaaaagtcaaccgaaccaaaccaatct-----gcatgcttttttaccttgtggttcggatgatttttcgtcttaaaa 1330982  T
Q  156 tcaaaccaaaccgcaccgcaaacacc 181  Q
     | || ||||||||| ||||||||||    
T  1330981 ccgaatcaaaccgcatcgcaaacacc 1330956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 42785612 - 42785660
Alignment:
Q  23 cgcaacaatcgatccaacccaaaccgtattggtttggtttggtttgaat 71  Q
    |||| ||||||| |||| |||||||| ||||||||||||||||||||||    
T  42785612 cgcatcaatcgaaccaatccaaaccgcattggtttggtttggtttgaat 42785660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 15320673 - 15320715
Alignment:
Q  139 gacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    ||||||||| ||||||||| |||||||||||||||| ||||||    
T  15320673 gacttttagcctcaaaatcgaaccaaaccgcaccgcgaacacc 15320715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 20985896 - 20985949
Alignment:
Q  35 tccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaa 88  Q
    ||||| |||||||| ||| ||||||||||||||| |||||| ||| ||||||||    
T  20985896 tccaatccaaaccgcattagtttggtttggtttggattttattttaaaagtcaa 20985949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 30759624 - 30759713
Alignment:
Q  21 atcgcaacaatcgatccaacccaaaccgtattggtttggtttggtttg-----aattttaattttaaagtcaaccaaaccaaaccaaact 105  Q
    |||||| ||| ||||| ||| ||||||| |||||||||||||||||||     ||||||| ||| |||| ||||| || |||||||||||    
T  30759624 atcgcaccaaccgatctaacacaaaccgcattggtttggtttggtttggttcaaattttattttaaaagccaaccgaatcaaaccaaact 30759713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 181
Target Start/End: Original strand, 44979816 - 44979905
Alignment:
Q  92 aaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    |||| |||||||| ||||| |||| |||| ||||| | ||||  || ||||||||  ||||||| | |||||||||||||||| ||||||    
T  44979816 aaccgaaccaaaccaaaccgcatgcttttttatctcgcggtttggatgacttttatgctcaaaaccgaaccaaaccgcaccgcgaacacc 44979905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 9e-32; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 23 - 179
Target Start/End: Original strand, 2832372 - 2832533
Alignment:
Q  23 cgcaacaatcgatccaacccaaaccgtattggtttggtttggtttga-----attttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgat 117  Q
    |||| ||| ||||| ||||||||||| ||||||||| ||||||||||     |||||| ||| |||||||||| ||||||||||||| ||||| |||| |    
T  2832372 cgcaccaaccgatcaaacccaaaccgcattggtttgatttggtttgattcggattttattttaaaagtcaaccgaaccaaaccaaaccaaaccgcatgct 2832471  T
Q  118 tttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaaca 179  Q
    ||| ||||||||||||| || ||||||||| ||||||| ||||||||||| |||||| ||||    
T  2832472 tttttatcttgtggttcggatgacttttagcctcaaaaccaaaccaaaccacaccgcgaaca 2832533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 27054165 - 27054094
Alignment:
Q  32 cgatccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaa 103  Q
    |||||||| ||||| || |||||||||||||||||||||||||| ||| ||| |||||||||||||||||||    
T  27054165 cgatccaatccaaatcgcattggtttggtttggtttgaattttattttaaaattcaaccaaaccaaaccaaa 27054094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 33 - 180
Target Start/End: Original strand, 55467635 - 55467777
Alignment:
Q  33 gatccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgattttatatcttgtggt 132  Q
    ||||||| |||||||| ||||||||| ||||||| | |||||| ||| |||||||||| |||||||||||||     | |||  || | |||||||  ||    
T  55467635 gatccaatccaaaccgcattggtttgatttggttcggattttattttaaaagtcaaccgaaccaaaccaaac-----cgcatacttatttatcttgcagt 55467729  T
Q  133 tcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacac 180  Q
    || || ||||||||| ||||||| | ||||||||||||||||||||||    
T  55467730 tcggatgacttttagcctcaaaaccgaaccaaaccgcaccgcaaacac 55467777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 29 - 181
Target Start/End: Original strand, 42363210 - 42363361
Alignment:
Q  29 aatcgatccaacccaaaccgtattggtt----tggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgattttatat 124  Q
    ||||||||||| |||||||| |||||||    |||||||||| | |||||  |||||||||||||| |||||||||||||     | ||||||||| |||    
T  42363210 aatcgatccaaaccaaaccgcattggttgatttggtttggttcggattttgtttttaaagtcaaccgaaccaaaccaaac-----cgcatgattttttat 42363304  T
Q  125 cttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    |||| |||||| |  |||||||  ||||||| | ||||||||||||| || ||||||    
T  42363305 cttgcggttcaaattacttttaccctcaaaaccgaaccaaaccgcactgcgaacacc 42363361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 25465887 - 25465821
Alignment:
Q  35 tccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaacca 101  Q
    ||||||||||| |||||||||||||||||||| | |||||| ||| |||||||| ||||||||||||    
T  25465887 tccaacccaaatcgtattggtttggtttggttcggattttattttaaaagtcaatcaaaccaaacca 25465821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 37045408 - 37045327
Alignment:
Q  23 cgcaacaatcgatccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaact 105  Q
    |||| ||| |||| ||||||||||| |||||||||||||||||| | ||||| ||||||||| ||||| ||||||||||||||    
T  37045408 cgcaccaaccgatacaacccaaaccatattggtttggtttggttcggatttt-attttaaagccaaccgaaccaaaccaaact 37045327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 183
Target Start/End: Complemental strand, 54122092 - 54121965
Alignment:
Q  51 ttggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtct 150  Q
    |||||||||||||||| | |||||| ||| |||||||||| |||||||||||||     | |||  |||| ||||||  ||||| || ||||||||  ||    
T  54122092 ttggtttggtttggttcggattttattttaaaagtcaaccgaaccaaaccaaac-----cgcatacttttttatcttacggttcggatgacttttaacct 54121998  T
Q  151 caaaatcaaaccaaaccgcaccgcaaacacctt 183  Q
    ||||||| || ||||| ||||||||||||||||    
T  54121997 caaaatcgaatcaaactgcaccgcaaacacctt 54121965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 44651035 - 44650982
Alignment:
Q  51 ttggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaac 104  Q
    |||| ||||||||||| | |||||| ||||||||||||||||||||||||||||    
T  44651035 ttggattggtttggttcggattttatttttaaagtcaaccaaaccaaaccaaac 44650982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 181
Target Start/End: Original strand, 2566382 - 2566466
Alignment:
Q  97 aaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    |||| ||| |||||||||  || | |||||||||||||||| |||||||||  |||||||| ||||||| |||||| ||||||||    
T  2566382 aaccgaaccaaaccacatatttctttatcttgtggttcagatgacttttagcatcaaaatcgaaccaaagcgcaccacaaacacc 2566466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 4554757 - 4554705
Alignment:
Q  51 ttggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaa 103  Q
    |||||||||||||||||| || ||| |||||||||||||| ||||||||||||    
T  4554757 ttggtttggtttggtttggatgttacttttaaagtcaaccgaaccaaaccaaa 4554705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 45629292 - 45629212
Alignment:
Q  23 cgcaacaatcgatccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaa 103  Q
    |||| ||||| ||| || |||||||||||||||||| ||||||| | | |||| ||| ||||||||||||| |||||||||    
T  45629292 cgcaccaatcaatctaatccaaaccgtattggtttgatttggttcggagtttattttaaaagtcaaccaaatcaaaccaaa 45629212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 20846575 - 20846491
Alignment:
Q  23 cgcaacaatcgatccaacccaaaccgtattggtttg----gtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaa 103  Q
    |||| ||| ||||||||||||||||| |||||||||    | |||||||| |||||| ||| |||||||||| ||||||||||||    
T  20846575 cgcaccaaccgatccaacccaaaccgcattggtttgatttggttggtttggattttattttaaaagtcaaccgaaccaaaccaaa 20846491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 174
Target Start/End: Original strand, 38651977 - 38652117
Alignment:
Q  23 cgcaacaatcgatccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgattttat 122  Q
    |||| ||| ||||||||||||||||| ||| |||||||||||     || ||| |||||||||||||| |||||||||     ||||| ||| ||||| |    
T  38651977 cgcatcaaccgatccaacccaaaccgcattagtttggtttgg-----atattatttttaaagtcaaccgaaccaaacc-----aaaccgcat-atttttt 38652065  T
Q  123 atcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgc 174  Q
    |||||| | ||| || ||||||||   |||||| ||||||||||||||||||    
T  38652066 atcttgcgattcggatgacttttaccttcaaaaccaaaccaaaccgcaccgc 38652117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 92 - 174
Target Start/End: Original strand, 50562617 - 50562699
Alignment:
Q  92 aaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgc 174  Q
    |||| |||||||| |||||||||| |||| ||||| || ||| ||| ||||||||  || |||||| ||||||||||||||||    
T  50562617 aaccgaaccaaaccaaaccacatgcttttttatctcgtagtttagatgacttttatgcttaaaatcgaaccaaaccgcaccgc 50562699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 8557969 - 8558022
Alignment:
Q  51 ttggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaac 104  Q
    |||||||||||||||| | |||||| |||||||||||| |||||| ||||||||    
T  8557969 ttggtttggtttggttcggattttatttttaaagtcaatcaaaccgaaccaaac 8558022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 50578997 - 50579065
Alignment:
Q  34 atccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaa 103  Q
    ||||||||||||||  ||||||||||||| ||| | |||||| |||||||||||||| || |||||||||    
T  50578997 atccaacccaaaccacattggtttggttt-gttcggattttatttttaaagtcaaccgaagcaaaccaaa 50579065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 10481623 - 10481710
Alignment:
Q  23 cgcaacaatcgatccaacccaaaccgtattggtttggtttggtttga-----attttaattttaaagtcaaccaaaccaaaccaaact 105  Q
    |||| ||| ||||||||| ||||||  ||||||||| ||||||||||     |||||| ||| |||||||||| ||||||||||||||    
T  10481623 cgcatcaaccgatccaactcaaaccacattggtttgatttggtttgattcaaattttattttaaaagtcaaccgaaccaaaccaaact 10481710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 38680886 - 38680824
Alignment:
Q  42 caaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaac 104  Q
    ||||||| |||||||||||||||||  ||||||| ||| |||||||||  |||| ||||||||    
T  38680886 caaaccgaattggtttggtttggttcaaattttattttaaaagtcaacttaaccgaaccaaac 38680824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 4280346 - 4280298
Alignment:
Q  56 ttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaac 104  Q
    ||||||| |||||||||||| ||| |||||||||| | |||||||||||    
T  4280346 ttggttttgtttgaattttattttaaaagtcaaccgagccaaaccaaac 4280298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 8557945 - 8557981
Alignment:
Q  32 cgatccaacccaaaccgtattggtttggtttggtttg 68  Q
    |||||| |||||||||| |||||||||||||||||||    
T  8557945 cgatccgacccaaaccgcattggtttggtttggtttg 8557981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 180
Target Start/End: Complemental strand, 32880336 - 32880248
Alignment:
Q  92 aaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacac 180  Q
    |||| |||||||  |||||||||| |||| ||||| | ||||  || ||||||||  ||||||  | ||||||||||||||||||||||    
T  32880336 aaccgaaccaaatcaaaccacatgcttttttatctcgcggtttggaggacttttatgctcaaagccgaaccaaaccgcaccgcaaacac 32880248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 29 - 181
Target Start/End: Original strand, 5122373 - 5122520
Alignment:
Q  29 aatcgatccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgattttatatcttg 128  Q
    ||||||||||||||| |||  ||||||||||||||||| | |||||| |||||||||||||| ||||||| |||||     | |||| |||| |||||||    
T  5122373 aatcgatccaacccagaccacattggtttggtttggttcggattttatttttaaagtcaaccgaaccaaatcaaac-----cgcatgcttttttatcttg 5122467  T
Q  129 tggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    ||||| | | ||||||||  ||||||| | |||||||||||||||||||||||    
T  5122468 tggtttatatgacttttaccctcaaaaccgaaccaaaccgcaccgcaaacacc 5122520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 33 - 179
Target Start/End: Original strand, 36106412 - 36106554
Alignment:
Q  33 gatccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgattttatatcttgtggt 132  Q
    |||||||| ||||||| ||||||||||||||||| | |||||| ||| |||||||||| ||||||||||    ||||| |||| |||| ||||||| |||    
T  36106412 gatccaactcaaaccgcattggtttggtttggttcggattttattttaaaagtcaaccgaaccaaacca----aaaccgcatgtttttttatcttgcggt 36106507  T
Q  133 tcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaaca 179  Q
    || || ||||||||  ||||||| | |||||||||||||||| ||||    
T  36106508 tcggatgacttttaacctcaaaaccgaaccaaaccgcaccgcgaaca 36106554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 48338431 - 48338358
Alignment:
Q  32 cgatccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaact 105  Q
    ||||||||  ||||||| |||| |||||||||||||| |||||| ||| |||||||||| ||||||||||||||    
T  48338431 cgatccaattcaaaccgcattgatttggtttggtttggattttattttaaaagtcaaccgaaccaaaccaaact 48338358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 18319549 - 18319615
Alignment:
Q  23 cgcaacaatcgatccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaac 89  Q
    |||| ||| ||||||||||||||||| ||||||||||||||||  |||||||| ||| |||||||||    
T  18319549 cgcaccaaccgatccaacccaaaccgcattggtttggtttggtacgaattttattttaaaagtcaac 18319615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 18399132 - 18399066
Alignment:
Q  23 cgcaacaatcgatccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaac 89  Q
    |||| ||| ||||||||||||||||| ||||||||||||||||  |||||||| ||| |||||||||    
T  18399132 cgcaccaaccgatccaacccaaaccgcattggtttggtttggtacgaattttattttaaaagtcaac 18399066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 181
Target Start/End: Original strand, 23120268 - 23120393
Alignment:
Q  51 ttggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtct 150  Q
    |||||||||||||||||| || ||  |||||||||||| | |||||||||||||     | |||| |||| ||||||| ||||| || ||||||||   |    
T  23120268 ttggtttggtttggtttggatgttttttttaaagtcaatcgaaccaaaccaaac-----cgcatgcttttttatcttgcggttcggatgacttttacctt 23120362  T
Q  151 caaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    ||||||| || ||||||||||||| ||||||    
T  23120363 caaaatcgaatcaaaccgcaccgcgaacacc 23120393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 15723986 - 15723899
Alignment:
Q  23 cgcaacaatcgatccaacccaaaccgtatt-----ggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaact 105  Q
    |||| ||| ||||||||||||||||| |||     |||||||||||||||| || ||| |||||||||||||| |||||||| |||||    
T  15723986 cgcatcaaccgatccaacccaaaccgcattagtttggtttggtttggtttggatgttatttttaaagtcaaccgaaccaaactaaact 15723899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 181
Target Start/End: Complemental strand, 10218706 - 10218625
Alignment:
Q  100 caaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    ||||| ||||| |||| |||| ||||||| |||| ||| ||||||||  ||||||| | ||||||| |||||||||||||||    
T  10218706 caaaccaaaccgcatgcttttttatcttgaggtttagatgacttttatgctcaaaaccgaaccaaaacgcaccgcaaacacc 10218625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 173
Target Start/End: Original strand, 10778520 - 10778601
Alignment:
Q  92 aaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccg 173  Q
    ||||||||||||  ||||| | || |||| ||||||| ||||||||  ||||||| |||||||||| || ||||||||||||    
T  10778520 aaccaaaccaaatcaaaccgcgtgtttttttatcttgcggttcagataacttttaatctcaaaatcgaatcaaaccgcaccg 10778601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 19753532 - 19753585
Alignment:
Q  51 ttggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaac 104  Q
    |||||||||||||||| |||||||| ||| |||||||||| ||||||| |||||    
T  19753532 ttggtttggtttggttcgaattttattttaaaagtcaaccgaaccaaatcaaac 19753585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 19786274 - 19786221
Alignment:
Q  51 ttggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaac 104  Q
    |||||||||||||||| |||||||| ||| |||||||||| ||||||| |||||    
T  19786274 ttggtttggtttggttcgaattttattttaaaagtcaaccgaaccaaatcaaac 19786221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 29335186 - 29335255
Alignment:
Q  117 ttttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacaccttaaa 186  Q
    |||| ||||||| | || ||||||||||||  ||||||||| |||||||| |||||||||||||| ||||    
T  29335186 ttttttatcttgcgattaagaagacttttaacctcaaaatcgaaccaaactgcaccgcaaacaccgtaaa 29335255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 18396419 - 18396347
Alignment:
Q  32 cgatccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaac 104  Q
    ||||||||||||||||  ||||||||||||| ||| | ||||||  || |||||||||  |||||||||||||    
T  18396419 cgatccaacccaaaccacattggtttggttttgttcggattttatcttaaaagtcaactgaaccaaaccaaac 18396347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 28147877 - 28147798
Alignment:
Q  25 caacaatcgatccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaac 104  Q
    |||||||||||| || |||||||| ||||||||||||||| |   ||| || ||| ||||||||| |||| |||||||||    
T  28147877 caacaatcgatcaaatccaaaccgcattggtttggtttggatcagattatattttaaaagtcaacaaaactaaaccaaac 28147798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 29335108 - 29335142
Alignment:
Q  34 atccaacccaaaccgtattggtttggtttggtttg 68  Q
    ||||||| |||||||||||||||||||||||||||    
T  29335108 atccaactcaaaccgtattggtttggtttggtttg 29335142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 1566073 - 1566114
Alignment:
Q  28 caatcgatccaacccaaaccgtattggtttggtttggtttga 69  Q
    |||||||||||  |||||||| ||||||||||||||||||||    
T  1566073 caatcgatccagtccaaaccgcattggtttggtttggtttga 1566114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 5061334 - 5061293
Alignment:
Q  130 ggttcagaagacttttagtctcaaaatcaaaccaaaccgcac 171  Q
    ||||| ||||||||||| |||||||||| |||||||||||||    
T  5061334 ggttcggaagacttttaatctcaaaatcgaaccaaaccgcac 5061293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 21069112 - 21069063
Alignment:
Q  56 ttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaact 105  Q
    ||||||||||| |||||| | ||| ||||||||||||||| |||||||||    
T  21069112 ttggtttggttcgaatttaattttaaaagtcaaccaaaccgaaccaaact 21069063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 23449972 - 23450009
Alignment:
Q  23 cgcaacaatcgatccaacccaaaccgtattggtttggt 60  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  23449972 cgcaacaatcgatccaatccaaaccgcattggtttggt 23450009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 181
Target Start/End: Complemental strand, 6333347 - 6333263
Alignment:
Q  97 aaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    |||||||| ||||| |||| |||| ||||| | ||||  || |||||||   ||||||||| |||||||||||||||| ||||||    
T  6333347 aaccaaaccaaaccgcatgcttttttatctcgcggtttggatgacttttttgctcaaaatcgaaccaaaccgcaccgcgaacacc 6333263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 181
Target Start/End: Complemental strand, 31301326 - 31301242
Alignment:
Q  97 aaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    |||||||| ||||| |||| |||| ||||| | ||||  || ||||||||  |||||||  ||||||||| ||||||||||||||    
T  31301326 aaccaaaccaaaccgcatgtttttttatctcgcggtttggatgacttttatgctcaaaactaaaccaaactgcaccgcaaacacc 31301242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 35233294 - 35233326
Alignment:
Q  36 ccaacccaaaccgtattggtttggtttggtttg 68  Q
    ||||||||| |||||||||||||||||||||||    
T  35233294 ccaacccaagccgtattggtttggtttggtttg 35233326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 180
Target Start/End: Complemental strand, 43630613 - 43630525
Alignment:
Q  92 aaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacac 180  Q
    ||||||||||||| ||||| |||  |||| |||||   ||||  || ||||||||  ||||||||| |||||||||||||||| |||||    
T  43630613 aaccaaaccaaaccaaaccgcatatttttttatctcacggtttggatgacttttatactcaaaatcgaaccaaaccgcaccgcgaacac 43630525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 49640914 - 49640866
Alignment:
Q  56 ttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaac 104  Q
    ||||||||||| |||||||| ||| ||||||||||||| |||| |||||    
T  49640914 ttggtttggttcgaattttattttaaaagtcaaccaaatcaaatcaaac 49640866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 8e-20; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 40436536 - 40436455
Alignment:
Q  23 cgcaacaatcgatccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaac 104  Q
    |||| ||| ||||||||||||||||| |||||||||||| ||||  ||||||| |||||||||||||| |||||||||||||    
T  40436536 cgcaccaaccgatccaacccaaaccgcattggtttggttcggttcaaattttatttttaaagtcaaccgaaccaaaccaaac 40436455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 51 - 181
Target Start/End: Complemental strand, 33566028 - 33565901
Alignment:
Q  51 ttggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtct 150  Q
    |||||||||||||||| |||||||| |||  ||||||||| |||||||||||||     || |   |||| ||||||| |||||| | ||||||||| ||    
T  33566028 ttggtttggtttggttcgaattttattttagaagtcaaccgaaccaaaccaaaccg---catacttttttttatcttgcggttcaaatgacttttagcct 33565932  T
Q  151 caaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    ||||| |||||||||| ||||||||||||||    
T  33565931 caaaaccaaaccaaactgcaccgcaaacacc 33565901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 77 - 172
Target Start/End: Original strand, 30254163 - 30254258
Alignment:
Q  77 ttttaaagtcaaccaaaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcacc 172  Q
    |||||||||||||| ||||||||| ||| |||||||||| || | ||||||| ||||  ||  | |||||| ||||||||||||||||||||||||    
T  30254163 ttttaaagtcaaccgaaccaaaccgaaccaaaccacatgcttatttatcttgcggttttgataatttttagcctcaaaatcaaaccaaaccgcacc 30254258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 9012820 - 9012897
Alignment:
Q  23 cgcaacaatcgatccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaacc 100  Q
    |||| ||| ||||||||||||||||| ||||||||||||||||| | ||| || ||| |||||||| |||||||||||    
T  9012820 cgcaccaaccgatccaacccaaaccgcattggtttggtttggttcggattgtattttaaaagtcaatcaaaccaaacc 9012897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 92 - 181
Target Start/End: Original strand, 36910378 - 36910467
Alignment:
Q  92 aaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    |||| |||||||||||||| |||| |||| ||||| | ||||  || ||||||||  |||||||||||||||||||||||||| ||||||    
T  36910378 aaccgaaccaaactaaaccgcatgcttttttatctcgcggttttgatgacttttatgctcaaaatcaaaccaaaccgcaccgcgaacacc 36910467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 19539468 - 19539400
Alignment:
Q  32 cgatccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaacc 100  Q
    ||||||||||||| ||| ||||||||||||||||| | |||||| ||| ||||||||||| ||||||||    
T  19539468 cgatccaacccaatccgcattggtttggtttggttcggattttattttaaaagtcaaccataccaaacc 19539400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 181
Target Start/End: Original strand, 28073243 - 28073327
Alignment:
Q  97 aaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    ||||||||||||||||||| |||| ||| ||| |||||||| ||||||||| || |||  ||| |||||||||||||| ||||||    
T  28073243 aaccaaactaaaccacatgtttttttatattgcggttcagatgacttttagccttaaacccaagccaaaccgcaccgcgaacacc 28073327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 170
Target Start/End: Original strand, 31497610 - 31497734
Alignment:
Q  51 ttggtttggtttggtttgaattttaattttaaagtcaacc-----aaaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagactttt 145  Q
    |||||||||||||||||| || ||| ||||||||||||||     |||||||||||||| ||||| | || |||| ||||||| ||||| || |||||||    
T  31497610 ttggtttggtttggtttggatgttatttttaaagtcaaccgaaccaaaccaaaccaaaccaaaccgcgtgcttttttatcttgcggttcggatgactttt 31497709  T
Q  146 agtctcaaaatcaaaccaaaccgca 170  Q
    |   |||||| ||||||||| ||||    
T  31497710 accttcaaaaccaaaccaaagcgca 31497734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 22811250 - 22811309
Alignment:
Q  122 tatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    |||||||  ||||||| ||||||||| |||||||||||||||||||||||||| ||||||    
T  22811250 tatcttgcagttcagatgacttttagcctcaaaatcaaaccaaaccgcaccgcgaacacc 22811309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 31497588 - 31497670
Alignment:
Q  34 atccaacccaaaccgta-----ttggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaacca 111  Q
    ||||||||||||||| |     |||||||||||||||||| || ||| |||||||||||||| ||||||||||||| ||||||    
T  31497588 atccaacccaaaccgcattagtttggtttggtttggtttggatgttatttttaaagtcaaccgaaccaaaccaaaccaaacca 31497670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 6591299 - 6591246
Alignment:
Q  51 ttggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaac 104  Q
    |||||||||||||||| |||||||| ||| |||||||||| |||||||||||||    
T  6591299 ttggtttggtttggttagaattttattttaaaagtcaaccgaaccaaaccaaac 6591246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 51 - 180
Target Start/End: Complemental strand, 44336844 - 44336719
Alignment:
Q  51 ttggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgattttat-atcttgtggttcagaagacttttagtc 149  Q
    |||||||||||||||| | ||| || ||| |||||||||| |||||||||||||     | |||| |||| | |||||| ||||| || ||||||||  |    
T  44336844 ttggtttggtttggttcggattgtattttaaaagtcaaccgaaccaaaccaaac-----cgcatgttttttttatcttgcggttcggatgacttttaaac 44336750  T
Q  150 tcaaaatcaaaccaaaccgcaccgcaaacac 180  Q
    |||||| | |||||||||||||||| |||||    
T  44336749 tcaaaaccgaaccaaaccgcaccgcgaacac 44336719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 6616994 - 6616941
Alignment:
Q  51 ttggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaac 104  Q
    |||||||||||||||| |||||||| ||| |||||||||| || ||||||||||    
T  6616994 ttggtttggtttggttagaattttattttaaaagtcaaccgaaacaaaccaaac 6616941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 7428452 - 7428497
Alignment:
Q  59 gtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaac 104  Q
    |||||||| |||||||| ||| |||||||||| |||||||||||||    
T  7428452 gtttggttcgaattttattttaaaagtcaaccgaaccaaaccaaac 7428497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 10661189 - 10661100
Alignment:
Q  92 aaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    |||| |||||||| ||||| |||| |||| ||||| | ||||  || ||||||||  ||||||| | |||||||||||||||| ||||||    
T  10661189 aaccgaaccaaaccaaaccgcatgcttttttatctcgcggtttggatgacttttatgctcaaaaccgaaccaaaccgcaccgcgaacacc 10661100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 11218985 - 11218896
Alignment:
Q  92 aaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    ||||||||||||| ||| | |||  || | ||||||| | ||| || ||||||||| ||||||||| |||||||||||||| | ||||||    
T  11218985 aaccaaaccaaaccaaatcgcatacttatttatcttgcgtttcggatgacttttagcctcaaaatcgaaccaaaccgcaccccgaacacc 11218896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 36340771 - 36340824
Alignment:
Q  51 ttggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaac 104  Q
    |||||||||||||||| | |||||| ||| |||||||||| ||||||| |||||    
T  36340771 ttggtttggtttggttcggattttattttaaaagtcaaccgaaccaaatcaaac 36340824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 12660275 - 12660331
Alignment:
Q  59 gtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaaccacatg 115  Q
    |||||||| | |||||| ||||||| |||||| ||||||||||||| ||||| ||||    
T  12660275 gtttggttcggattttatttttaaactcaaccgaaccaaaccaaaccaaaccgcatg 12660331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 181
Target Start/End: Complemental strand, 33068296 - 33068212
Alignment:
Q  97 aaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    |||||||| ||||| |||| |||| ||||||| ||||  || ||||||||  ||||||| | |||||||||||||| | ||||||    
T  33068296 aaccaaaccaaaccgcatgcttttttatcttgcggtttggatgacttttatgctcaaaaccgaaccaaaccgcaccacgaacacc 33068212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 56 - 181
Target Start/End: Complemental strand, 6248148 - 6248023
Alignment:
Q  56 ttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaa 155  Q
    |||||||| ||  ||||||| ||| |||||||||||||||||||||||| ||||| |||  || | | ||||| ||||  || |||||||||||||||||    
T  6248148 ttggtttgattcaaattttattttaaaagtcaaccaaaccaaaccaaaccaaaccgcatacttatttttcttgcggtttggatgacttttagtctcaaaa 6248049  T
Q  156 tcaaaccaaaccgcaccgcaaacacc 181  Q
    ||||| |||||||||| || ||||||    
T  6248048 tcaaatcaaaccgcactgcgaacacc 6248023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 32 - 180
Target Start/End: Original strand, 9962139 - 9962282
Alignment:
Q  32 cgatccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgattttatatcttgtgg 131  Q
    ||||||||||||||||  |||||||||||||||||||||||||| ||  ||||||     ||||||| ||||| ||||| | || |||| ||||||| |     
T  9962139 cgatccaacccaaaccacattggtttggtttggtttgaattttatttgaaaagtc-----aaccaaatcaaacaaaaccgcctgtttttttatcttgcga 9962233  T
Q  132 ttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacac 180  Q
    ||| || |||||||||| ||||||   |||||||||||||||| |||||    
T  9962234 ttcggatgacttttagtttcaaaactgaaccaaaccgcaccgcgaacac 9962282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 103
Target Start/End: Complemental strand, 18310097 - 18310019
Alignment:
Q  25 caacaatcgatccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaa 103  Q
    |||||| |||||||| |||||||| ||| |||||||||||||||| ||||| ||| ||| |||||||||||||||||||    
T  18310097 caacaaccgatccaaaccaaaccgcatttgtttggtttggtttgagttttattttaaaattcaaccaaaccaaaccaaa 18310019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 35980443 - 35980523
Alignment:
Q  101 aaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    |||| |||||||||| |||| || |||| ||||| || ||||||||| ||||||| | |||||||||||||||||||||||    
T  35980443 aaaccaaaccacatgcttttttaccttgcggttcggatgacttttagcctcaaaaccgaaccaaaccgcaccgcaaacacc 35980523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 3935454 - 3935403
Alignment:
Q  130 ggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    |||||| | ||||||||||||||||||| |||||||||||||||||||||||    
T  3935454 ggttcatatgacttttagtctcaaaatcgaaccaaaccgcaccgcaaacacc 3935403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 181
Target Start/End: Original strand, 21685553 - 21685678
Alignment:
Q  51 ttggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtct 150  Q
    ||||||||||||||||   |||||| ||| |||||||||  |||||||||||||     | ||||  ||| ||||||| |||||||| ||||||||| ||    
T  21685553 ttggtttggtttggttctgattttattttaaaagtcaactgaaccaaaccaaac-----cgcatgcatttgtatcttgcggttcagatgacttttagcct 21685647  T
Q  151 caaaatcaaaccaaaccgcaccgcaaacacc 181  Q
     |||| | |||||||| ||||||||||||||    
T  21685648 taaaaccgaaccaaactgcaccgcaaacacc 21685678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 181
Target Start/End: Original strand, 1161789 - 1161878
Alignment:
Q  92 aaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    ||||||||||||| |||||||||| |||| ||||| | ||||| || |||||||   ||||||| | |||||||||||| ||||||||||    
T  1161789 aaccaaaccaaaccaaaccacatgcttttttatctcgcggttcggatgacttttctgctcaaaaccgaaccaaaccgcatcgcaaacacc 1161878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 181
Target Start/End: Original strand, 51252462 - 51252551
Alignment:
Q  92 aaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    |||| |||||||| |||||||||| |||| ||||| | ||||  || ||||||||  ||||||||| |||||||||||||||| ||||||    
T  51252462 aacccaaccaaaccaaaccacatgcttttttatctcgcggtttggatgacttttatgctcaaaatcgaaccaaaccgcaccgcgaacacc 51252551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 51 - 181
Target Start/End: Original strand, 11074410 - 11074534
Alignment:
Q  51 ttggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtct 150  Q
    ||||||||||| ||||   |||||| |||||||||||||| |||||||||||||     |  ||| |||| ||||||  ||||| |||||||||||  ||    
T  11074410 ttggtttggttaggttcagattttatttttaaagtcaaccgaaccaaaccaaac-----cgtatgtttttttatcttaaggttcggaagacttttaccct 11074504  T
Q  151 caaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    |||| || |||||||||||||||| ||||||    
T  11074505 caaa-tcgaaccaaaccgcaccgcgaacacc 11074534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 181
Target Start/End: Original strand, 2490044 - 2490164
Alignment:
Q  56 ttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaa 155  Q
    ||||||||||| |||||||| ||| |||||||||  ||||||||||||      | |||  || | ||||||| ||||| ||  |||||||| |||||||    
T  2490044 ttggtttggttcgaattttattttaaaagtcaactgaaccaaaccaaat-----cgcatacttatttatcttgcggttcggataacttttagcctcaaaa 2490138  T
Q  156 tcaaaccaaaccgcaccgcaaacacc 181  Q
    || |||||||| ||||||||||||||    
T  2490139 tcgaaccaaactgcaccgcaaacacc 2490164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 8165538 - 8165615
Alignment:
Q  32 cgatccaacccaaaccgtattggtttggtttggtttg-----aattttaattttaaagtcaaccaaaccaaaccaaac 104  Q
    ||||||||||||||||| ||| |||||||||||||||      |||||| |||||||||||||| |||| ||||||||    
T  8165538 cgatccaacccaaaccgcatttgtttggtttggtttggttcagattttatttttaaagtcaaccgaaccgaaccaaac 8165615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 32910361 - 32910434
Alignment:
Q  32 cgatccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaact 105  Q
    ||||||||| ||||||| ||| ||||| |||||||   ||| || |||||||||||||| ||||||||||||||    
T  32910361 cgatccaacacaaaccgcatttgtttgttttggttcagattctatttttaaagtcaaccgaaccaaaccaaact 32910434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 34914200 - 34914151
Alignment:
Q  56 ttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaact 105  Q
    ||||||||||| |||||||| ||| ||||||||||||| |||||||||||    
T  34914200 ttggtttggttcgaattttattttaaaagtcaaccaaagcaaaccaaact 34914151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 8268662 - 8268610
Alignment:
Q  122 tatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgc 174  Q
    ||||||| |||||||| ||||||||| ||||||| | ||||||||||||||||    
T  8268662 tatcttgcggttcagatgacttttagcctcaaaaccgaaccaaaccgcaccgc 8268610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 19051199 - 19051131
Alignment:
Q  32 cgatccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaacc 100  Q
    |||||||||||||||||| ||||||| ||| |||| | ||| || ||| ||| ||||||||||||||||    
T  19051199 cgatccaacccaaaccgttttggtttcgttcggttcggattgtactttaaaaatcaaccaaaccaaacc 19051131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 177
Target Start/End: Complemental strand, 24629978 - 24629898
Alignment:
Q  97 aaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaa 177  Q
    |||||||| |||||||||| |||| |||| || | ||  |  ||||||||||||||||| ||| |||||||||||||||||    
T  24629978 aaccaaaccaaaccacatgcttttttatcatgcgatttggctgacttttagtctcaaaaccaacccaaaccgcaccgcaaa 24629898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 181
Target Start/End: Complemental strand, 12973664 - 12973506
Alignment:
Q  23 cgcaacaatcgatccaacccaaaccgtattggtttggtttggtttga-----attttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgat 117  Q
    |||| ||| |||||||| |||||||  ||| ||||||||||||||||     |||||| ||| ||| ||||||||||||||||     ||||| |||  |    
T  12973664 cgcaccaaccgatccaatccaaaccacattagtttggtttggtttgattcggattttattttcaaaatcaaccaaaccaaacc-----aaaccgcatatt 12973570  T
Q  118 tttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    | | ||||||| ||||| || |||||| ||  |||||| | |||||||||||||||| ||||||    
T  12973569 tatttatcttgcggttcggatgactttcagcttcaaaaccgaaccaaaccgcaccgcgaacacc 12973506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 27507568 - 27507627
Alignment:
Q  122 tatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    ||||||| ||||| || |||||||| |||||||| | |||||||||||||||| ||||||    
T  27507568 tatcttgcggttcggatgacttttattctcaaaaccgaaccaaaccgcaccgcgaacacc 27507627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 24630014 - 24629964
Alignment:
Q  51 ttggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaacca 101  Q
    ||||||||||||||||   |||||| ||| |||||||||||||||||||||    
T  24630014 ttggtttggtttggttaagattttattttaaaagtcaaccaaaccaaacca 24629964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 50952061 - 50952122
Alignment:
Q  71 ttttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgattttatatcttgtggtt 133  Q
    ||||| ||| |||||||||| ||||||||||||| |||||||||| |||| ||| ||||||||    
T  50952061 ttttattttaaaagtcaaccgaaccaaaccaaaccaaaccacatg-ttttttatgttgtggtt 50952122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 39127462 - 39127421
Alignment:
Q  139 gacttttagtctcaaaatcaaaccaaaccgcaccgcaaacac 180  Q
    ||||||||  |||||||| |||||||||||||||||||||||    
T  39127462 gacttttaacctcaaaattaaaccaaaccgcaccgcaaacac 39127421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 39158306 - 39158347
Alignment:
Q  28 caatcgatccaacccaaaccgtattggtttggtttggtttga 69  Q
    |||| |||||||||||||||  ||||||||||||||||||||    
T  39158306 caattgatccaacccaaaccacattggtttggtttggtttga 39158347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 50471306 - 50471245
Alignment:
Q  43 aaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaac 104  Q
    |||||| ||||||||||||||||||| |||||| ||| |||  ||||  |||||||||||||    
T  50471306 aaaccgcattggtttggtttggtttggattttattttaaaatgcaactgaaccaaaccaaac 50471245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 35992617 - 35992661
Alignment:
Q  51 ttggtttggtttggtttgaattttaattttaaagtcaaccaaacc 95  Q
    |||||||||||||| ||| |||||| ||| |||||||||||||||    
T  35992617 ttggtttggtttggattggattttattttaaaagtcaaccaaacc 35992661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 181
Target Start/End: Original strand, 27572023 - 27572181
Alignment:
Q  23 cgcaacaatcgatccaacccaaaccgtattggtttggtttggtttga-----attttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgat 117  Q
    |||| ||| ||||||||||||||||| |||||||||||||||||||      |||||| ||| |||| ||||| |||||||||||||     | |||| |    
T  27572023 cgcaccaaccgatccaacccaaaccgcattggtttggtttggtttggttcggattttattttaaaagacaaccgaaccaaaccaaac-----cgcatgct 27572117  T
Q  118 tttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    ||| || |||| ||||| || ||||||||  ||||||| | |||||||||||||||||||||||    
T  27572118 tttttaccttgcggttcggatgacttttaacctcaaaaccgaaccaaaccgcaccgcaaacacc 27572181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 171
Target Start/End: Complemental strand, 6595049 - 6594929
Alignment:
Q  51 ttggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtct 150  Q
    ||||||||||||| |||| || ||| |||||||||||||| |||| |||||||  |||||| ||| |||| |||||| || |||||| ||||||||   |    
T  6595049 ttggtttggtttgatttggatgttatttttaaagtcaaccgaaccgaaccaaatcaaaccaaatgtttttttatcttatgattcagatgacttttacctt 6594950  T
Q  151 caaaatcaaaccaaaccgcac 171  Q
    |||||   |||||||||||||    
T  6594949 caaaacggaaccaaaccgcac 6594929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 166
Target Start/End: Complemental strand, 2589010 - 2588936
Alignment:
Q  92 aaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaac 166  Q
    ||||||||||||| ||||| |||| |||| ||||||  |||||| | ||||||||||||||||||| ||||||||    
T  2589010 aaccaaaccaaaccaaaccgcatgtttttttatcttacggttcaaatgacttttagtctcaaaatcgaaccaaac 2588936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 181
Target Start/End: Complemental strand, 41454935 - 41454805
Alignment:
Q  51 ttggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtct 150  Q
    ||||||||||||||||   |||||| ||| |||||||||| |||| |||||||| ||||| |||  || | ||||||||| |||| | |||||||||  |    
T  41454935 ttggtttggtttggttcagattttattttaaaagtcaaccgaaccgaaccaaaccaaaccgcatacttatttatcttgtgtttcaaatgacttttagctt 41454836  T
Q  151 caaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    ||||||   |  |||||||||||||||||||    
T  41454835 caaaattgtattaaaccgcaccgcaaacacc 41454805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 6633410 - 6633341
Alignment:
Q  32 cgatccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaacca 101  Q
    ||||||||| ||||||  |||||||||||||||||   |||||| ||| |||||||||||||||||||||    
T  6633410 cgatccaactcaaaccacattggtttggtttggttcagattttattttaaaagtcaaccaaaccaaacca 6633341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 36567788 - 36567740
Alignment:
Q  56 ttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaac 104  Q
    |||||||||||||||||||| ||| ||||||||||||||| ||||||||    
T  36567788 ttggtttggtttgaattttattttaaaagtcaaccaaaccgaaccaaac 36567740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 14652543 - 14652472
Alignment:
Q  32 cgatccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaa 103  Q
    |||||||||||||| || |||||||||||||||||   |||||| |||||||||||||  ||||||| ||||    
T  14652543 cgatccaacccaaatcgcattggtttggtttggttcagattttatttttaaagtcaactgaaccaaatcaaa 14652472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 181
Target Start/End: Original strand, 17085284 - 17085373
Alignment:
Q  92 aaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    |||| |||||||||||| | |||| |||| ||||| ||||||  || ||||||||  |||||||   |||||||||||||||||||||||    
T  17085284 aaccgaaccaaactaaatcgcatgcttttttatctcgtggtttggatgacttttatgctcaaaactgaaccaaaccgcaccgcaaacacc 17085373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 181
Target Start/End: Original strand, 30265838 - 30265927
Alignment:
Q  92 aaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    |||| |||||||| ||||  |||| |||| ||||||| |||| ||| || |||||  ||||||| |||||||||||||||||| ||||||    
T  30265838 aaccgaaccaaaccaaactgcatgtttttttatcttgcggtttagatgatttttatgctcaaaaccaaaccaaaccgcaccgcgaacacc 30265927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 35240835 - 35240888
Alignment:
Q  51 ttggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaac 104  Q
    |||||||||||||||| | |||||| |||||||||||||| ||||||| |||||    
T  35240835 ttggtttggtttggttcggattttatttttaaagtcaaccgaaccaaatcaaac 35240888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 333371 - 333414
Alignment:
Q  139 gacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacct 182  Q
    ||||||||  ||||||||| ||||||||||||||||||||||||    
T  333371 gacttttatgctcaaaatcgaaccaaaccgcaccgcaaacacct 333414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 18432180 - 18432113
Alignment:
Q  28 caatcgatccaacccaaacc-----gtattggtttggtttggtttgaattttaattttaaagtcaacc 90  Q
    ||||||||||||||||||||     ||||||||||||||| ||||| |||||| ||| ||||||||||    
T  18432180 caatcgatccaacccaaaccaaagtgtattggtttggttttgtttggattttattttaaaagtcaacc 18432113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 563899 - 563964
Alignment:
Q  35 tccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaacc 100  Q
    ||||| |||||||  |||| ||| ||||| || |||||||| ||| ||||||||||||||||||||    
T  563899 tccaatccaaaccaaattgattttgtttgattcgaattttattttaaaagtcaaccaaaccaaacc 563964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 17132101 - 17132154
Alignment:
Q  51 ttggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaac 104  Q
    |||||||||||||||| | |||||| ||| |||||||||| ||||||| |||||    
T  17132101 ttggtttggtttggttcggattttattttaaaagtcaaccgaaccaaatcaaac 17132154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 173
Target Start/End: Complemental strand, 23411750 - 23411630
Alignment:
Q  54 gtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgattttat-atcttgtggttcagaagacttttagtctca 152  Q
    |||||||||| || ||| |||| ||| ||| |||||| |||||||| |||| ||||||| || |||| | |||||| | || ||| ||  | ||||||||    
T  23411750 gtttggtttgattcgaaatttattttaaaaatcaaccgaaccaaacaaaaccaaaccacgtgttttttttatcttgggatttagatgatatctagtctca 23411651  T
Q  153 aaatcaaaccaaaccgcaccg 173  Q
    |||||||| ||||| ||||||    
T  23411650 aaatcaaatcaaactgcaccg 23411630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 37375423 - 37375337
Alignment:
Q  23 cgcaacaatcgatccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaac 109  Q
    |||| ||| |||| |||||||||||| |||||||| |||||||| | ||| || |||||||||||||||||||||||||||| ||||    
T  37375423 cgcaccaaccgattcaacccaaaccgcattggtttagtttggttcggattctatttttaaagtcaaccaaaccaaaccaaaccaaac 37375337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 48642879 - 48642798
Alignment:
Q  28 caatcgatccaacccaaaccgtattggtttggtttggtttg-----aattttaattttaaagtcaaccaaaccaaaccaaac 104  Q
    ||||||||||||||||||||| |||||||||||||||||||     ||||| | |||||||||||||| |||||||||||||    
T  48642879 caatcgatccaacccaaaccgcattggtttggtttggtttggttcaaatttaatttttaaagtcaaccgaaccaaaccaaac 48642798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 46147326 - 46147236
Alignment:
Q  12 tcgaataatatcgcaacaatcgatccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaa 102  Q
    ||||| || |||||| ||| |||||||||  |||||| |||||||||||||||||   |||||| ||| ||||||||||||||||||||||    
T  46147326 tcgaaaaaaatcgcaccaaccgatccaacgtaaaccgcattggtttggtttggttcagattttattttaaaagtcaaccaaaccaaaccaa 46147236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 179
Target Start/End: Complemental strand, 23032769 - 23032622
Alignment:
Q  32 cgatccaacccaaaccgtattggtttggtttggtttg-----aattttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgattttatatct 126  Q
    |||||||| |||||||  |||||||||||||||||||     ||||||| ||| ||||||     |||| ||||||||||||||||||  |||| |||||    
T  23032769 cgatccaatccaaacctcattggtttggtttggtttggttcaaattttattttaaaagtc-----aaccgaaccaaactaaaccacatacttttttatct 23032675  T
Q  127 tgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaaca 179  Q
    |  |||||||| ||||||||| ||||| |   ||||||||||||| |||||||    
T  23032674 ttcggttcagatgacttttagcctcaacactgaaccaaaccgcacagcaaaca 23032622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 22701316 - 22701378
Alignment:
Q  36 ccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaa 98  Q
    ||||||||||||||||||||||||||||||| |||||||  ||| |||||||| |||| ||||    
T  22701316 ccaacccaaaccgtattggtttggtttggttcgaattttcttttaaaagtcaatcaaatcaaa 22701378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 2661809 - 2661851
Alignment:
Q  140 acttttagtctcaaaatcaaaccaaaccgcaccgcaaacacct 182  Q
    ||||||||||||||||||||| ||||||||||||| |||||||    
T  2661809 acttttagtctcaaaatcaaatcaaaccgcaccgcgaacacct 2661851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 181
Target Start/End: Original strand, 27054779 - 27054868
Alignment:
Q  92 aaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    |||| |||||||| ||||| |||| |||| ||||| | ||||  || |||||||   ||||||| |||||||||||||||||||||||||    
T  27054779 aaccgaaccaaaccaaaccgcatgcttttttatctcgcggtttggatgacttttttgctcaaaaccaaaccaaaccgcaccgcaaacacc 27054868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 20306699 - 20306632
Alignment:
Q  34 atccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtc-aaccaaaccaaacc 100  Q
    ||||||| ||||||  ||||||||||||||||| | |||||| ||| |||||| ||||||||||||||    
T  20306699 atccaactcaaaccacattggtttggtttggttcggattttattttaaaagtcaaaccaaaccaaacc 20306632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 181
Target Start/End: Original strand, 32942057 - 32942215
Alignment:
Q  23 cgcaacaatcgatccaacccaaaccgtattggtttggtttggttt-----gaattttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgat 117  Q
    |||| ||||||||||||| ||||||  ||||||||||||||||||     | ||| || ||| |||||||||| || ||||||     ||||| |||| |    
T  32942057 cgcaccaatcgatccaactcaaaccacattggtttggtttggtttggttcggattgtattttaaaagtcaaccgaatcaaacc-----aaaccgcatgtt 32942151  T
Q  118 tttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    ||| |||||||  |||| || ||||||||  ||||||| | |||||||| ||||||| ||||||    
T  32942152 tttttatcttgcagttcggatgacttttaacctcaaaaccgaaccaaactgcaccgcgaacacc 32942215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 179
Target Start/End: Complemental strand, 5932726 - 5932644
Alignment:
Q  97 aaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaaca 179  Q
    |||||||| ||||| |||| |||  ||||| | |||||||| ||||||||  ||||||| | || ||||||||||||||||||    
T  5932726 aaccaaaccaaaccgcatgctttcttatctcgcggttcagatgacttttatgctcaaaaccgaatcaaaccgcaccgcaaaca 5932644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 23729478 - 23729420
Alignment:
Q  32 cgatccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaacc 90  Q
    |||||||| |||||||||||| |||||||||||||   |||||| ||| ||||||||||    
T  23729478 cgatccaaaccaaaccgtattagtttggtttggttcagattttattttaaaagtcaacc 23729420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 33434183 - 33434130
Alignment:
Q  51 ttggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaac 104  Q
    |||||||||||||||| |||||| | ||| ||| ||||| ||||||||||||||    
T  33434183 ttggtttggtttggttcgaatttaattttaaaaatcaacaaaaccaaaccaaac 33434130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 35820098 - 35820151
Alignment:
Q  51 ttggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaac 104  Q
    |||||||||||||||| | |||||| ||| |||||||||| ||||||| |||||    
T  35820098 ttggtttggtttggttcggattttattttaaaagtcaaccgaaccaaatcaaac 35820151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 24361546 - 24361625
Alignment:
Q  97 aaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaa 177  Q
    |||||||| |||||||||| |||| |||||   |||| ||| |||||||  |||||||| | |||||||||||||||||||    
T  24361546 aaccaaaccaaaccacatgtttttttatctcacggtttagatgacttttt-tctcaaaaccgaaccaaaccgcaccgcaaa 24361625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 34751060 - 34751008
Alignment:
Q  50 attggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaa 102  Q
    |||||||||||||| || | |||||| ||| ||| ||||||||||||||||||    
T  34751060 attggtttggtttgattcggattttattttaaaaatcaaccaaaccaaaccaa 34751008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 97 - 181
Target Start/End: Complemental strand, 128667 - 128583
Alignment:
Q  97 aaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    |||||||| |||||||||| |||| ||||||| ||||  || ||||||||  ||||||||| |||||||||||||||||||||||    
T  128667 aaccaaaccaaaccacatgcttttttatcttgcggtttggatgacttttatgctcaaaatcgaaccaaaccgcaccgcaaacacc 128583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 106065 - 105976
Alignment:
Q  92 aaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    |||| |||||||| |||||||||| |||| ||||||| ||||  || |||||||   ||||||||| |||||||||||||||| ||||||    
T  106065 aaccgaaccaaaccaaaccacatgcttttttatcttgcggtttggatgacttttttgctcaaaatcgaaccaaaccgcaccgcgaacacc 105976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 25953 - 25880
Alignment:
Q  32 cgatccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaact 105  Q
    ||||||||  ||||||| |||| |||||||||||||| |||||| ||| |||||||||| ||||||||||||||    
T  25953 cgatccaattcaaaccgcattgatttggtttggtttggattttattttaaaagtcaaccgaaccaaaccaaact 25880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 182
Target Start/End: Original strand, 13859375 - 13859520
Alignment:
Q  32 cgatccaacccaaaccgtattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgattttatatcttgtgg 131  Q
    |||||||||  |||||| |||||||| ||||||||||| ||||  ||| || ||||||||||||||| |      || |||||| |||| ||| ||| ||    
T  13859375 cgatccaactgaaaccgcattggtttagtttggtttgagtttttttttaaacgtcaaccaaaccaaatc-----gaaacacatgcttttttattttgcgg 13859469  T
Q  132 ttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacct 182  Q
    ||| ||  | |||||  |||||||||||||||||||||| |||||||||||    
T  13859470 ttcggataatttttaacctcaaaatcaaaccaaaccgcatcgcaaacacct 13859520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 4562930 - 4562871
Alignment:
Q  49 tattggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaa 108  Q
    ||||||||||||||||||| ||||||| ||| ||| |||||  |||||||||||||||||    
T  4562930 tattggtttggtttggtttaaattttattttaaaaatcaactgaaccaaaccaaactaaa 4562871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 92 - 182
Target Start/End: Original strand, 892388 - 892478
Alignment:
Q  92 aaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacct 182  Q
    |||| |||||||| ||||| |||| |||| ||| ||| ||||| || ||||||||| || |||||  |||||||||||||||| |||||||    
T  892388 aaccgaaccaaaccaaaccgcatgtttttttattttgcggttcggatgacttttagccttaaaattgaaccaaaccgcaccgcgaacacct 892478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 51 - 165
Target Start/End: Original strand, 32190681 - 32190790
Alignment:
Q  51 ttggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtct 150  Q
    |||||||||||| ||||| |||||| ||| ||||| ||||||| ||||||     ||||| |||| |||| |||| |  |||||||| ||||||||| ||    
T  32190681 ttggtttggtttagtttggattttattttaaaagttaaccaaatcaaacc-----aaacctcatgtttttttatcatacggttcagatgacttttagcct 32190775  T
Q  151 caaaatcaaaccaaa 165  Q
    ||||||| |||||||    
T  32190776 caaaatcgaaccaaa 32190790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 181
Target Start/End: Original strand, 10494428 - 10494517
Alignment:
Q  92 aaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    |||| |||||||  ||||| |||| |||| ||||| | ||||  || ||||||||  ||||||| |||||||||||||||||||||||||    
T  10494428 aaccgaaccaaatcaaaccccatgcttttttatctcgcggtttggatgacttttatgctcaaaaccaaaccaaaccgcaccgcaaacacc 10494517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 11417127 - 11417074
Alignment:
Q  51 ttggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaac 104  Q
    |||||||||||||||||| |||||| ||| |||||||| ||||||||| |||||    
T  11417127 ttggtttggtttggtttggattttattttaaaagtcaatcaaaccaaatcaaac 11417074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 181
Target Start/End: Original strand, 13532295 - 13532418
Alignment:
Q  51 ttggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgattttatatcttgtggttcagaaga-cttttagtc 149  Q
    |||||||||||||||| |||||||||||||||||||      ||  || ||||| |||||||||  |||| | ||||||||||| || || ||||||  |    
T  13532295 ttggtttggtttggttcgaattttaattttaaagtc------actgaatcaaaccaaaccacat--ttttttttcttgtggttcggatgaccttttaccc 13532386  T
Q  150 tcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    | |||| | |||||||||||||||||||||||    
T  13532387 ttaaaaccgaaccaaaccgcaccgcaaacacc 13532418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 160
Target Start/End: Complemental strand, 30752597 - 30752498
Alignment:
Q  55 tttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaa 154  Q
    ||||||||| ||||||||||| ||| |||||||||| |||||||||     ||||| |||| |||| ||||||| |||||||| |||||||  |||||||    
T  30752597 tttggtttgttttgaatttta-tttaaaagtcaaccgaaccaaacc-----aaaccgcatgcttttttatcttgcggttcagatgacttttcatctcaaa 30752504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 181
Target Start/End: Original strand, 35040257 - 35040346
Alignment:
Q  92 aaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    ||||||||||||| ||||| |||| |||| ||||| | ||||  || ||||||||  ||||||| | |||||||||||||||| ||||||    
T  35040257 aaccaaaccaaaccaaaccgcatgcttttttatctcgcggtttggatgacttttatgctcaaaaccgaaccaaaccgcaccgcgaacacc 35040346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 7170112 - 7170161
Alignment:
Q  55 tttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaac 104  Q
    ||||||||||||||||||||| ||| |||||||||| | |||| ||||||    
T  7170112 tttggtttggtttgaattttattttaaaagtcaaccgatccaatccaaac 7170161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 181
Target Start/End: Original strand, 69587 - 69676
Alignment:
Q  92 aaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    |||| |||||||| |||||||||| |||| ||||| | ||||  || ||||||||  ||||||||| |||||||||||||||| ||||||    
T  69587 aaccgaaccaaaccaaaccacatgcttttttatctcgcggtttggatgacttttatgctcaaaatcgaaccaaaccgcaccgcgaacacc 69676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 6312 - 6259
Alignment:
Q  51 ttggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaac 104  Q
    |||||||||||||||| |||||||| ||| |||||||||| || ||||||||||    
T  6312 ttggtttggtttggttagaattttattttaaaagtcaaccgaatcaaaccaaac 6259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0664 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 6091 - 6055
Alignment:
Q  32 cgatccaacccaaaccgtattggtttggtttggtttg 68  Q
    ||||||||||||||||| |||||||||||||||||||    
T  6091 cgatccaacccaaaccgcattggtttggtttggtttg 6055  T

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Target: scaffold0029 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 181
Target Start/End: Original strand, 40627 - 40721
Alignment:
Q  87 aaccaaaccaaaccaaactaaaccacatgattttatatcttgtggttcagaagacttttagtctcaaaatcaaaccaaaccgcaccgcaaacacc 181  Q
    |||||||||||||||||| ||||| ||||| ||| |||||   ||||  || |||| |||  ||||||| | |||||||||||||||| ||||||    
T  40627 aaccaaaccaaaccaaaccaaaccgcatgagtttttatctcacggtttggatgactattatgctcaaaaccgaaccaaaccgcaccgcgaacacc 40721  T

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Target: scaffold0015 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 62471 - 62418
Alignment:
Q  51 ttggtttggtttggtttgaattttaattttaaagtcaaccaaaccaaaccaaac 104  Q
    |||||||||||||||| | |||||| ||| |||||||||| ||||||| |||||    
T  62471 ttggtttggtttggttcggattttattttaaaagtcaaccgaaccaaatcaaac 62418  T

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