View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_456 (Length: 209)
Name: NF8208A_low_456
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_456 |
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Alignment Details
Target: chr3 (Bit Score: 76; Significance: 2e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 51 - 182
Target Start/End: Original strand, 41766772 - 41766893
Alignment:
| Q |
51 |
aaaagccttgcatttgatatatgtatagagatgatacttctaacaaaatgtccgaagatttagaaaaagacaatgagaatgataatgatggacaaataca |
150 |
Q |
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| T |
41766772 |
aaaagccttgcatttgatatatgtatagagatgatacttctaacaaaatgtccgtagatttagaaaaagacaat-------ataatga---acaaataca |
41766861 |
T |
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| Q |
151 |
atcatctccgacgagtattttagaatccgtcg |
182 |
Q |
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| T |
41766862 |
atcatctctgatgaatattttagaatccgtcg |
41766893 |
T |
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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 41765958 - 41765993
Alignment:
| Q |
11 |
actgagatgaacactttgaatataacatgactatcg |
46 |
Q |
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| T |
41765958 |
actgaaatgaacactttgaatataacatgactatcg |
41765993 |
T |
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