View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_457 (Length: 209)
Name: NF8208A_low_457
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_457 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 7e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 13 - 190
Target Start/End: Original strand, 47544510 - 47544687
Alignment:
| Q |
13 |
ccaagaatataacaattctgctgttgagaacagaatattaaacgctgattttgaaacaataaaagcgaaggtaagtccttgatttaactactttactagt |
112 |
Q |
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| T |
47544510 |
ccaaaaatataacaattctgctgttgagaacagaatattaaacgctgattttgaaacaataaaagcgaaggtaagtccttgatttaactactttactagt |
47544609 |
T |
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| Q |
113 |
aaaacttgtcatagaaacctactacttggatcaatactctctgcaaaccgaaatgccttaagcttacacagttagaac |
190 |
Q |
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| T |
47544610 |
aaaacttgttatagaaacctactacttggatcaatactctctccaaaccggaatgccttaagcttacgcagtcagaac |
47544687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 47528411 - 47528546
Alignment:
| Q |
23 |
aacaattctgctgttgagaacagaatattaaacgctgattttgaaacaataaaagcgaaggtaagtccttgatttaactactttactagtaaaacttgtc |
122 |
Q |
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||||||||||||||||| |||||||||||||| |||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
47528411 |
aacaattctgctgttgacaacagaatattaaaagctgatgttgaaacattaagagcgaaggtaagtccttgatttaactactttactagtaaaactggtt |
47528510 |
T |
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| Q |
123 |
atagaaacctactacttggatcaatactctctgcaa |
158 |
Q |
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| T |
47528511 |
atagaagcctactacttggatcaaaattctctgcaa |
47528546 |
T |
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