View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_46 (Length: 398)
Name: NF8208A_low_46
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_46 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 37821843 - 37821446
Alignment:
| Q |
1 |
aatattgaagttatgtaaagattccaggacttaacaagattctatacccaaccttgtattaagattttctatatctgtagctttaattttgcaggcaagt |
100 |
Q |
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| T |
37821843 |
aatatggaagttatgtaaagattccaggacttaacaagattctatacccaaccttgtattaagattttctatatctgtagctttaattttgcaggcaagt |
37821744 |
T |
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| Q |
101 |
ttaaattatttgatctggggctgcattataaaatgtgcaattgattgtgtgaagatgtcgttgaattggtgttgcatcttaacttctgtgcacttgagac |
200 |
Q |
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| T |
37821743 |
ttaaattatttgatctggggctgcattataaaatgtgcaattgattgtgtgaagatgtcgttgaattggtgttgcatcttaacttctgtgcacttgagac |
37821644 |
T |
|
| Q |
201 |
tgacattatgcatgttatacaacaactatctgtctgtacctagttactgcgtgtcaatttagttaagttggtgatttagcatgtgctataatactggcca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37821643 |
tgacattatgcatgttatacaacaactatctgtctgtacctagttactgcgtgtcaatttagttcagttggtgatttagcatgtgctataatactggcca |
37821544 |
T |
|
| Q |
301 |
aaactggccatagtactgttctttatttgattattattttgataatgtaatgttttttaacggttgatactgtaatactattaatctcttacatatat |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37821543 |
aaactggccatagtactgttctttatttgattattattttgataatgtaatgttttttaacggttgatactgtaatactattcatctcttacatatat |
37821446 |
T |
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