View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_460 (Length: 208)
Name: NF8208A_low_460
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_460 |
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Alignment Details
Target: chr7 (Bit Score: 89; Significance: 4e-43; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 3686449 - 3686306
Alignment:
| Q |
53 |
ttcttcttcattgtatcatcatttgaaagggatcttgtgcttttgttttctaaattgttcttactatgttagtgctatatatggtttatgccat------ |
146 |
Q |
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| T |
3686449 |
ttctttttcattgtatcatcatttgaaagggatcttgtgcttttgttttctaaattgttcttactatgttagtattatatatggtttatgccttttgttc |
3686350 |
T |
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| Q |
147 |
atatcatc-gtttcatgtctatcttattattatcatcgtttcat |
189 |
Q |
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| T |
3686349 |
attacatctgtttcatgtctatcttattattatcatcgtttcat |
3686306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 3687028 - 3687100
Alignment:
| Q |
67 |
atcatcatttgaaagggatcttgtgcttttgttttct-aaattgttcttactatgttagtgctatatatggtttat |
141 |
Q |
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| T |
3687028 |
atcatcatttgaaagggatcatgtgcttttcttttttaaaattgttcttactatgttag---tatatatggtttat |
3687100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 36
Target Start/End: Complemental strand, 3686502 - 3686472
Alignment:
| Q |
6 |
agggggatagcaagatcgtaaaacaaagttg |
36 |
Q |
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| T |
3686502 |
agggggatagcaagatcgtaaaacaaagttg |
3686472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 41979749 - 41979687
Alignment:
| Q |
66 |
tatcatcatttgaa---agggatcttgtgcttttgttttctaaattgttcttactatgttagt |
125 |
Q |
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| T |
41979749 |
tatcatcatttgaatgaagggatcaggtgcatttgtttattaaattgttcttactatgttagt |
41979687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 4432462 - 4432410
Alignment:
| Q |
70 |
atcatttgaaagggatcttgtgcttttgttttctaaattgttcttactatgtt |
122 |
Q |
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| T |
4432462 |
atcatttgaaggggatcatgtgaattggctttctaaattgttcttactatgtt |
4432410 |
T |
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