View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_462 (Length: 208)
Name: NF8208A_low_462
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_462 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 41168371 - 41168540
Alignment:
| Q |
20 |
tattaaaaagggactcagggaagacattgtttggtgtctatcgttgagagttgaatgctaaaaaaccttacggannnnnnnnnnnnattacaccgaatat |
119 |
Q |
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| T |
41168371 |
tattaaaaagggactcagggaagacattgtttggtgtctatcgttgagagttgaatgctaaaaaaccttacaaatttttattttttattacaccgaatat |
41168470 |
T |
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| Q |
120 |
tgatcgtaattgtatttgtcgcctctatatagtacattcagcatattgttttggtaatacttggccattg |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41168471 |
tgatcgtaattgtatttgtcgcctctatatagtacattcagcatattgttttggtaatacttggccattg |
41168540 |
T |
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