View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_47 (Length: 397)
Name: NF8208A_low_47
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 14 - 378
Target Start/End: Original strand, 6370972 - 6371336
Alignment:
| Q |
14 |
acatcagcaagcaatggacttaaaatcccacaatgaccataacaaggtaccttagcagcttcctcgggagcaaaactaaagaatgttctcaaccaatacg |
113 |
Q |
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| T |
6370972 |
acattagcaagcaatggacttaaaatcccacaatgaccataacaaggtaccttagcagcttcctcaggagcaaaactaaagaatgttctcaaccaatacg |
6371071 |
T |
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| Q |
114 |
gatccggtttcggttcattctctttaagaatcctcttcctagtagctttccttttcttatctttcttcaactcctccctttccactactctccgcggcac |
213 |
Q |
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| T |
6371072 |
gatccggtttcggttcattctctttaagaatcctcttcctagtagctttcctcttcttatctttcttcaactcctccctttccactactctccgcggcac |
6371171 |
T |
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| Q |
214 |
acgacccatcatcgccgattttatcaaactcaaaactttcttatctctagtacccttttcaacacattccatcacgacatcagtatcaactttctcaaaa |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6371172 |
acgacccatcatcgccgattttatcaaactcaaaactttcttatctctagtacccttttcaacacattccatcacaacatcagtatcaactttctcaaaa |
6371271 |
T |
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| Q |
314 |
atctcactcaaatcacccttcaaaaaccacaaataacccgcaaaattacttctaattgttcttat |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6371272 |
atctcactcaaatcacccttcaaaaaccacaaataacccgcgaaattacttctaattgttcttat |
6371336 |
T |
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