View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_471 (Length: 204)
Name: NF8208A_low_471
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_471 |
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Alignment Details
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 21 - 184
Target Start/End: Original strand, 10706629 - 10706792
Alignment:
| Q |
21 |
agaattgtcagaactaagtgtgctcagatttgggccatttggcattacattcttacacaaaggaggtggagcaacagatgacaaccgcaattggagacgg |
120 |
Q |
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| T |
10706629 |
agaattgtcagaatcaagtgtgctcagatttgggccatttggcattacattcttacacaaaggaggtggagcaacagatgacaaccgcaattggagacgg |
10706728 |
T |
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| Q |
121 |
ggtgctcctccaataatcgatgatccgtgcaggtttgcagcatcatccttaagaccttgcatga |
184 |
Q |
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| T |
10706729 |
ggtgctcctccaattatcgatgatccgtgcaggtttgcagcattatccttaagaccttgcatga |
10706792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 6387562 - 6387473
Alignment:
| Q |
21 |
agaattgtcagaactaagtgtgctcagatttgggccatttggcattacattcttacacaaaggaggtggagcaacagatgacaaccgcaa |
110 |
Q |
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| T |
6387562 |
agaattgtcagaattaagtgtgctcagatttgggccatttggcattacattcctacacaaagggggtggagcaacagatgacaactgcaa |
6387473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 6387161 - 6387101
Alignment:
| Q |
124 |
gctcctccaataatcgatgatccgtgcaggtttgcagcatcatccttaagaccttgcatga |
184 |
Q |
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| T |
6387161 |
gctcctccaattatagatgatccgtgagggtttgcagcaatatccttaagaccttgcatga |
6387101 |
T |
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