View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_476 (Length: 201)
Name: NF8208A_low_476
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_476 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 6e-76; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 7278794 - 7278625
Alignment:
| Q |
19 |
gatggcgaggtgaattgtatggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatggtagcg |
118 |
Q |
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| T |
7278794 |
gatggtgaggtgaattgtatggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatggtagcg |
7278695 |
T |
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| Q |
119 |
agggtaaatgtgtgaa---agaatataattttttgatgaaggaggggggtggtgaagatgaggaaggtga |
185 |
Q |
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| T |
7278694 |
agggtaaatgtgtgaaagaagaagatcattttttgatgaaggaggggggtggtgaagatgaggaaggtga |
7278625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 7375045 - 7375214
Alignment:
| Q |
19 |
gatggcgaggtgaattgtatggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatggtagcg |
118 |
Q |
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| T |
7375045 |
gatggcgaggtgaattgtatggagaaagaagagagggggtatgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatggtagcg |
7375144 |
T |
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| Q |
119 |
agggtaaatgtgtga---aagaatataattttttgatgaaggaggggggtggtgaagatgaggaaggtga |
185 |
Q |
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| T |
7375145 |
agggtaaatgtgtgaaagaagaagatcattttttgatgaaggaggggggtggtgaagatgaggaaggtga |
7375214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 7278873 - 7278789
Alignment:
| Q |
30 |
gaattgtatggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatggt |
114 |
Q |
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| T |
7278873 |
gaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtgaatgaggatggt |
7278789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 7374966 - 7375049
Alignment:
| Q |
30 |
gaattgtatggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatgg |
113 |
Q |
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| T |
7374966 |
gaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtgaatgaggatgg |
7375049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 7278593 - 7278543
Alignment:
| Q |
37 |
atggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaa |
87 |
Q |
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| T |
7278593 |
atggaggaagaagatagggggtgtaaggaggagaatgagggaggtgaaaaa |
7278543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 7375246 - 7375296
Alignment:
| Q |
37 |
atggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaa |
87 |
Q |
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|||||| ||||||| ||||||||| | ||| |||||||||||||||||||| |
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| T |
7375246 |
atggaggaagaagatagggggtgtaaggaggagaatgagggaggtgaaaaa |
7375296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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