View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_48 (Length: 396)
Name: NF8208A_low_48
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 7 - 367
Target Start/End: Original strand, 30552861 - 30553221
Alignment:
| Q |
7 |
tacacacctatgcccacaatttgaatcaggcactccaatgcatctgtaaaaataatctaataattgaatcacatactcacaagaaattgctataagaaag |
106 |
Q |
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| T |
30552861 |
tacacacctatgctcacaatttgaatcaggcactccaatgcatctgtaaaaataatctaataattgaatcaaatactcacaagaaattgctataagaaag |
30552960 |
T |
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| Q |
107 |
tgtttactgcaagtctactataccactatgaaccttgccatgcaccaaagtttgagataaaaaacagatgctttattgaaaaacaggccaaaaacgtcag |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30552961 |
tgtttactgcaagtctactataccactatgaaccttgccatgcaccaaagtttgagataaaaaacagatgcttcattgaaaaacaggccaaaaacgtcag |
30553060 |
T |
|
| Q |
207 |
atgagccaccaaaatacagttcaaccaatacctggtccactttgatatacattacaatcaacctaactccttgatgcatagactgcactccacagggaac |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30553061 |
atgagccaccaaaatacagttcaaccaatacctggtccactttgatatacattacaatcaacctaactccttgatgcatagactgcactccacagggaac |
30553160 |
T |
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| Q |
307 |
aatatcaaaattctcttcacctttgatgacataaatgcacactgagaactaccaaaaccaa |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30553161 |
aatatcaaaattctcttcacctttgatgacataaatgcacactgagaactaccaaaaccaa |
30553221 |
T |
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