View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_5 (Length: 537)
Name: NF8208A_low_5
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 22 - 464
Target Start/End: Complemental strand, 1045813 - 1045396
Alignment:
| Q |
22 |
ataagttatagccacaattcaagtcatatcaactccttaaacaaactacttttccattttctttaaattttaacaaaaatttcagtcacacacacagaat |
121 |
Q |
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| T |
1045813 |
ataagttatagccacaattcaagtcatatcaactccttaaacaaactacttttccattttctttaaattttaacaaaaatttcagtcacacaca--gaat |
1045716 |
T |
|
| Q |
122 |
gtttgccaaaaataacaaataacaagataaattgaaaaaattaggagcacaaaacgtgattacaatgagttatttattatacttgttaatcgaatagatt |
221 |
Q |
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| T |
1045715 |
gtttgccaaaaataacagataacaagataaattgaaaaaattaggagcacaa-------------tgagttatttattatacttgttaatcgaatagatt |
1045629 |
T |
|
| Q |
222 |
caaacagtgaagaaaagatcgtaccgtatagtgagagggtttcgttataattgaattgttttcgcgaagggtagaagcttcgatgatgcacttatgcaga |
321 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| | | | |
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| T |
1045628 |
caaacagtgaagaaaagatcgtaccttatagtgagagggtgtcgttataattgaattgttttcgccatgggtagaagcttcgatggt----------ata |
1045539 |
T |
|
| Q |
322 |
acctaaaatgaaactgagaagacgatgaatactactatcgatctaaaaatatgatttttcttgtgaaataagttttttagttagattttgatggtaaaat |
421 |
Q |
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| T |
1045538 |
accgaaaatgaaactgagaagacgatgaatactactatcgatctaaaaatatgatttttcttgtgaaataagttttttagttagattttgatggtaaaat |
1045439 |
T |
|
| Q |
422 |
taatattttattgattgtaaataatgtaacaattttatagagt |
464 |
Q |
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| T |
1045438 |
taatattttattgattgtaaataatgtaacaattttatagagt |
1045396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 1039345 - 1039303
Alignment:
| Q |
215 |
atagattcaaacagtgaagaaaagatcgtaccgtatagtgaga |
257 |
Q |
| |
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| T |
1039345 |
atagattcaaacagtgaagaaaagaacgtaccgtatcgtgaga |
1039303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 462 - 504
Target Start/End: Complemental strand, 18569081 - 18569039
Alignment:
| Q |
462 |
agtgaaattaaataggtggattctagggtgaaggttctattaa |
504 |
Q |
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| T |
18569081 |
agtgtaattatataggtggattctagggtgaaggtcctattaa |
18569039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 512
Target Start/End: Complemental strand, 24848475 - 24848438
Alignment:
| Q |
475 |
aggtggattctagggtgaaggttctattaagtgcctca |
512 |
Q |
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| T |
24848475 |
aggtggattctagggtgagggttctattaagtccctca |
24848438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 476 - 512
Target Start/End: Original strand, 24847783 - 24847819
Alignment:
| Q |
476 |
ggtggattctagggtgaaggttctattaagtgcctca |
512 |
Q |
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|
| T |
24847783 |
ggtggattctagggtgagggttctattaagtccctca |
24847819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 476 - 512
Target Start/End: Complemental strand, 4402335 - 4402299
Alignment:
| Q |
476 |
ggtggattctagggtgaaggttctattaagtgcctca |
512 |
Q |
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| T |
4402335 |
ggtggattctagggtgagggttctattaagtccctca |
4402299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 476 - 512
Target Start/End: Complemental strand, 4707004 - 4706968
Alignment:
| Q |
476 |
ggtggattctagggtgaaggttctattaagtgcctca |
512 |
Q |
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| T |
4707004 |
ggtggattctagggtgagggttctattaagtccctca |
4706968 |
T |
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