View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_50 (Length: 388)
Name: NF8208A_low_50
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 49124386 - 49124225
Alignment:
| Q |
1 |
gaatgtagttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattacaactgttaacaaattaatgaacaattccgattggagaagt |
100 |
Q |
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| T |
49124386 |
gaatgtagttaaggctttttcaatcacaacattaaccaagtatacaaaattcaaaattacaactgttaacaaattaatgaacaattccgattggagaagt |
49124287 |
T |
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| Q |
101 |
tatagatcgttttcattctgcatcttaaaagttttgtccccttaacaaagtttattatgaat |
162 |
Q |
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| T |
49124286 |
tatagatcgttttcattctgcatcttaaaagttttgtccccttaacaaagtttattatgaat |
49124225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 155 - 370
Target Start/End: Complemental strand, 49124171 - 49123956
Alignment:
| Q |
155 |
ttatgaatattaaaatctatgttaacacacttaacatatttacattcttctttgatgaccagaggattagaatatttagatgaatattgttaacctcgat |
254 |
Q |
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| T |
49124171 |
ttatgaatattaaaatctatgttaacacacttaacatatttacattcttctttgatgaccagaggattagaatatctacatgagcattgttaccctcgag |
49124072 |
T |
|
| Q |
255 |
tgattcatatagatatgaaatcgtcaaatattctattagatgcaaacttcaatgccaggttatataactgaattttctaaatattttatcttcttccata |
354 |
Q |
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| T |
49124071 |
tgattcatagagatatgaaatcttcaaatattcttttagatgcaaacttcaatgccaaggtaaaaaactgaatttactatatattttatcttcttccaca |
49123972 |
T |
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| Q |
355 |
aagtattttgttcacc |
370 |
Q |
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| T |
49123971 |
aagtattttattcacc |
49123956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 11683266 - 11683218
Alignment:
| Q |
13 |
ggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca |
61 |
Q |
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|||| ||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
11683266 |
ggctatttcaatcacaactttaacctagtatacaaaattcaaaattaca |
11683218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 18988475 - 18988416
Alignment:
| Q |
2 |
aatgtagttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca |
61 |
Q |
| |
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|||||||||| |||| ||||||| ||||| |||||||||| | |||| |||||||||||| |
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| T |
18988475 |
aatgtagttaaggctatttcaattacaactttaaccaagtttgcaaagttcaaaattaca |
18988416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 30341290 - 30341349
Alignment:
| Q |
2 |
aatgtagttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca |
61 |
Q |
| |
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|||||||||| |||| ||||||| ||||| |||||||||| |||||| |||||||||||| |
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| T |
30341290 |
aatgtagttaaggctatttcaattacaactttaaccaagtttacaaagttcaaaattaca |
30341349 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 4271462 - 4271518
Alignment:
| Q |
255 |
tgattcatatagatatgaaatcgtcaaatattctattagatgcaaacttcaatgcca |
311 |
Q |
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|||| |||| |||| ||||||| || |||||||| |||||||||||||||||||||| |
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| T |
4271462 |
tgatccatagagatctgaaatcttctaatattcttttagatgcaaacttcaatgcca |
4271518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 2807806 - 2807862
Alignment:
| Q |
255 |
tgattcatatagatatgaaatcgtcaaatattctattagatgcaaacttcaatgcca |
311 |
Q |
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|||| |||| |||| ||||||| || |||||||| |||||||||||||||||||||| |
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| T |
2807806 |
tgatccatagagatctgaaatcttctaatattcttttagatgcaaacttcaatgcca |
2807862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 23917049 - 23917108
Alignment:
| Q |
2 |
aatgtagttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca |
61 |
Q |
| |
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|||||||||| |||| ||||||| ||||| |||||||||| | |||| |||||||||||| |
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| T |
23917049 |
aatgtagttaaggctatttcaattacaactttaaccaagtttgcaaagttcaaaattaca |
23917108 |
T |
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