View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208A_low_53 (Length: 383)

Name: NF8208A_low_53
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208A_low_53
NF8208A_low_53
[»] chr5 (2 HSPs)
chr5 (72-345)||(13879402-13879675)
chr5 (72-335)||(13875185-13875448)


Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 72 - 345
Target Start/End: Original strand, 13879402 - 13879675
Alignment:
Q  72 cttccttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgttaacaaagtcgcagtgcttccctttcaagtt 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13879402 cttccttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgttaacaaagtcgcagtgcttccctttcaagtt 13879501  T
Q  172 aagtgttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaatctcttccttcctcacgttgtca 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13879502 aagtgttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaatctcttccttcctcacgttgtca 13879601  T
Q  272 gcgacaagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatcatcatcatc 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13879602 gcgacaagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatcatcatcatc 13879675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 72 - 335
Target Start/End: Original strand, 13875185 - 13875448
Alignment:
Q  72 cttccttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgttaacaaagtcgcagtgcttccctttcaagtt 171  Q
    |||||||||| |||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||     
T  13875185 cttccttgttgttgagcttgggaaccacaatttcaaggaaattgttctctatcattttggctttagtgttaacaacgtcgaaatgcttccctttcaagtc 13875284  T
Q  172 aagtgttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaatctcttccttcctcacgttgtca 271  Q
     |||||  |||||||  |||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  13875285 gagtgtacctgaaaatcgatttcgacctggaagagcatccttaatcctgagagtaccgtgatcaacacagacatcaatctcttccttcctcacgttgttg 13875384  T
Q  272 gcgacaagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagat 335  Q
    ||||| |||||| |||| ||||||| ||||||||| ||||||  |||||| |||||||||||||    
T  13875385 gcgaccagattcaaccgaaaaatcaaagactcctcggtctcctcaaaatcacagagaacaagat 13875448  T

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