View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_54 (Length: 382)
Name: NF8208A_low_54
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 12 - 363
Target Start/End: Original strand, 6370985 - 6371336
Alignment:
| Q |
12 |
atggacatcaaatcccacaatgaccataacaaggtaccttagcagcttcctcgggagcaaaactaaagaatgttctcaaccaatacggatccggtttcgg |
111 |
Q |
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| T |
6370985 |
atggacttaaaatcccacaatgaccataacaaggtaccttagcagcttcctcaggagcaaaactaaagaatgttctcaaccaatacggatccggtttcgg |
6371084 |
T |
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| Q |
112 |
ttcattctctttaagaatcctcttcctagtagctttccttttcttatctttcttcaactcctccctttccactactctccgcggcacacgacccatcatc |
211 |
Q |
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| T |
6371085 |
ttcattctctttaagaatcctcttcctagtagctttcctcttcttatctttcttcaactcctccctttccactactctccgcggcacacgacccatcatc |
6371184 |
T |
|
| Q |
212 |
gccgattttatcaaactcaaaactttcttatctctagtacccttttcaacacattccatcacgacatcagtatcaactttctcaaaaatctcactcaaat |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6371185 |
gccgattttatcaaactcaaaactttcttatctctagtacccttttcaacacattccatcacaacatcagtatcaactttctcaaaaatctcactcaaat |
6371284 |
T |
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| Q |
312 |
cacccttcaaaaaccacaaataacccgcaaaattacttctaattgttcttat |
363 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6371285 |
cacccttcaaaaaccacaaataacccgcgaaattacttctaattgttcttat |
6371336 |
T |
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