View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_55 (Length: 380)
Name: NF8208A_low_55
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 10 - 374
Target Start/End: Complemental strand, 11886404 - 11886040
Alignment:
| Q |
10 |
attatactgcacctcctgatagtgctgatagtgagagagaattccgcattatgtgcaaaggaactagttcagagggttcatagttatattttcataagag |
109 |
Q |
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| T |
11886404 |
attacactgcacctcctgatagtgctgatagtgagagagaattccgcattatgtgcaaaggaactagttcagagggttcatagttatattttcataagag |
11886305 |
T |
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| Q |
110 |
ggtacattcaattattttaatggacacaaagcatgcataagcatttttacgctacaaacatatacatagacattgttttaagctacaaacaaatacacat |
209 |
Q |
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| T |
11886304 |
ggtacattcaattattttagtggacacaaagcatgcataagcatttttacgctacaaacatatacatagacattgttttaagctacaaacaaatacacat |
11886205 |
T |
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| Q |
210 |
ttcttcaatttcttttccctattataagtatacttcgattttttgactatcacattcgtttccttcactataatggacaaatagcttttcactcannnnn |
309 |
Q |
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| T |
11886204 |
ttcttcaatttcttttccctattataagtatacttcgattttttgactatcacattcgtttccttcactataatggacaaatagcttttcactcattttt |
11886105 |
T |
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| Q |
310 |
nnaatcgaaggaatatatatactttaaattacaggtgtggtggatgatagtctccgtcactataa |
374 |
Q |
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| T |
11886104 |
ttaatcaaaggaatatatatactttaaattacaggtgtggtggatgatagtctccgtcagtataa |
11886040 |
T |
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