View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_6 (Length: 536)
Name: NF8208A_low_6
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 12 - 530
Target Start/End: Complemental strand, 11886558 - 11886040
Alignment:
| Q |
12 |
tgaacaaaacacaagattaaaagcttgtaatattattaaattggttggaaggcgaattcaaactcacaatttcccatctgaaatttgactttcttctatc |
111 |
Q |
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| T |
11886558 |
tgaacaaaacacaagattaaaagcttgtaatattattaaattggttggaaggcgaattcaaactcacaatttcccatctgaaatttgactttcttctatc |
11886459 |
T |
|
| Q |
112 |
tgaaattgaactaccttgattttaagaatgttatgggggtaagagagaagcaacattacactgcacctcctgatagtgctgatagtgagagagaattccg |
211 |
Q |
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| T |
11886458 |
tgaaattgaactaccttgattttaagaatgttatgggggtaagagagaagcaacattacactgcacctcctgatagtgctgatagtgagagagaattccg |
11886359 |
T |
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| Q |
212 |
cattatgtgcaaaggaactagttcagagggttcatagttatattttcataagagggtacattcaattattttaatggacacaaagcatgcataagcattt |
311 |
Q |
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| T |
11886358 |
cattatgtgcaaaggaactagttcagagggttcatagttatattttcataagagggtacattcaattattttagtggacacaaagcatgcataagcattt |
11886259 |
T |
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| Q |
312 |
ttacgctacaaacatatacatagacattgttttaagctacaaacaaatacacatttcttcaatttcttttccctattataagtatacttcgattttttga |
411 |
Q |
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| T |
11886258 |
ttacgctacaaacatatacatagacattgttttaagctacaaacaaatacacatttcttcaatttcttttccctattataagtatacttcgattttttga |
11886159 |
T |
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| Q |
412 |
ctatcacattcgtttccttcactataatggacaaatagcttttcactcannnnnnnaatcgaaggaatatatatactttaaattacaggtgtggtggatg |
511 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11886158 |
ctatcacattcgtttccttcactataatggacaaatagcttttcactcatttttttaatcaaaggaatatatatactttaaattacaggtgtggtggatg |
11886059 |
T |
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| Q |
512 |
atagtctccgtcactataa |
530 |
Q |
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| T |
11886058 |
atagtctccgtcagtataa |
11886040 |
T |
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