View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_61 (Length: 370)
Name: NF8208A_low_61
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_61 |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 47117125 - 47116765
Alignment:
| Q |
1 |
atcatcaccggcgaagatggtgatgttggcgttcccgttgagctttgttgcctatcatacattctccgcctatccatctacaaaacaagaaattaaaaat |
100 |
Q |
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| T |
47117125 |
atcatcaccggtgaagacggtgatgttggcgttcccgttgagctttgttgcctatcatacattctccgcctatccatctacaaaacaagaaattaaaaat |
47117026 |
T |
|
| Q |
101 |
aatccttaaaaggtgatcgatcgagtcattgatacgttgatattgcttaccttgctttgtgatttgatcgttaaaaggtatgaatatttatctccttgaa |
200 |
Q |
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| T |
47117025 |
aatcgttaaaaggtgatcga----gtcattgatacgttgatattgcttaccttgctttgtgatttgatcgttaaaaggtatgaatatttatctccttgaa |
47116930 |
T |
|
| Q |
201 |
ttgaaactaaagatataaaagaaattggttattgaatatctttgataaaatatatatattgtaattacctgagaagcgatgaaacaaaacaatgtcagnn |
300 |
Q |
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| T |
47116929 |
ttgaaactaaagatataaaagaaattggttattgaatatctttgataaaatataactattgtaattacctgagaagcgatgaaacaaaacaatgtcagaa |
47116830 |
T |
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| Q |
301 |
nnnnngagataccataaggaaatgaaataacaagggtatgaggaagcttggagtgatgtccatct |
365 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
47116829 |
aaaaagagatatcataaggaaatgaaataacaagggtatgaggaagcttggagtggtgtccatct |
47116765 |
T |
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