View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_62 (Length: 369)
Name: NF8208A_low_62
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_62 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 9 - 350
Target Start/End: Original strand, 45206364 - 45206705
Alignment:
| Q |
9 |
aatgagacagaacaagtaactaacaacttcaataaaacagtaaaaataaatctgataattatatgactaaattaatctcattttcttacatcaagatgtt |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45206364 |
aatgagacagaacaagtaactaacaacttcaataaaacagtaaaaataaatctgataattatatgactaaattaatctcattttcttacatcaagatgtt |
45206463 |
T |
|
| Q |
109 |
cagtggacgaccagaagaattatactcagatgcaaatttcttgacagagtccaatgagctgagatctaactccatggcatcaagtttggctgagggaatg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45206464 |
cagtggacgaccagaagaattatactcagatgcaaatttcttgacagagtccaatgagctgagatctaactccatggcatcaagtttggctgagggaatg |
45206563 |
T |
|
| Q |
209 |
tccttgagtattgtatctttgacatctttagcagcaaccaagtttctcacacccataatcacatgaacaccgcgcaaagcaaggacacgagcagtctcag |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45206564 |
tccttgagtattgtatctttgacatctttagcagcaaccaagtttctcacacccataatcacatgcacaccgcgcaaagcaaggacacgagcagtctcag |
45206663 |
T |
|
| Q |
309 |
caccaatgccgctggatgctcctgttaccacaatgaccatat |
350 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||| |
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| T |
45206664 |
cgccaatgccgctggatgctcctgttaccacaatgaccatat |
45206705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 89 - 338
Target Start/End: Original strand, 45232325 - 45232574
Alignment:
| Q |
89 |
ttttcttacatcaagatgttcagtggacgaccagaagaattatactcagatgcaaatttcttgacagagtccaatgagctgagatctaactccatggcat |
188 |
Q |
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|||||||||||||||||||||| |||| ||||||| |||||| | || |||||||||||||||||||| |||||||| |||||||||||||||||| ||| |
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|
| T |
45232325 |
ttttcttacatcaagatgttcaatggaagaccagaggaattaaattcggatgcaaatttcttgacagattccaatgaactgagatctaactccatgacat |
45232424 |
T |
|
| Q |
189 |
caagtttggctgagggaatgtccttgagtattgtatctttgacatctttagcagcaaccaagtttctcacacccataatcacatgaacaccgcgcaaagc |
288 |
Q |
| |
|
||| ||| ||||||||||| ||||| ||||||| ||||||| ||| |||||||||||| ||||| ||| ||| ||||||||| ||||| |||||||| |
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| T |
45232425 |
caattttagctgagggaatctccttaagtattgcttctttgatatcattagcagcaaccttatttctaacagccacaatcacatggacaccacgcaaagc |
45232524 |
T |
|
| Q |
289 |
aaggacacgagcagtctcagcaccaatgccgctggatgctcctgttacca |
338 |
Q |
| |
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||| ||||| ||||||| | ||||| || ||||||||||||||||||| |
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| T |
45232525 |
aagaacacgcatagtctcaactccaataccactggatgctcctgttacca |
45232574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 137 - 350
Target Start/End: Original strand, 45233615 - 45233828
Alignment:
| Q |
137 |
gatgcaaatttcttgacagagtccaatgagctgagatctaactccatggcatcaagtttggctgagggaatgtccttgagtattgtatctttgacatctt |
236 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||| || |||||||||||||||| |||| ||||||||||||||| |
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|
| T |
45233615 |
gatgcaaatttcttgacagaatccaatgagttgagatctaactccatgatatcaagtttagcagagggaatgtccttgactattatatctttgacatctt |
45233714 |
T |
|
| Q |
237 |
tagcagcaaccaagtttctcacacccataatcacatgaacaccgcgcaaagcaaggacacgagcagtctcagcaccaatgccgctggatgctcctgttac |
336 |
Q |
| |
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|||| ||||| | ||||||| |||||||||||||||||||| | ||||| |||||||||||| ||||||||| |||||||| | ||||||||| ||| |
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| T |
45233715 |
tagcggcaactatatttctcatacccataatcacatgaacactgtgcaaaacaaggacacgagtagtctcagcgtcaatgccgtttgatgctcctactac |
45233814 |
T |
|
| Q |
337 |
cacaatgaccatat |
350 |
Q |
| |
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||||||| |||||| |
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|
| T |
45233815 |
cacaatgtccatat |
45233828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 89 - 335
Target Start/End: Original strand, 45248507 - 45248753
Alignment:
| Q |
89 |
ttttcttacatcaagatgttcagtggacgaccagaagaattatactcagatgcaaatttcttgacagagtccaatgagctgagatctaactccatggcat |
188 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||| |||||| | || ||||||||||| |||||||| |||||||| |||||||||||||||||| ||| |
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|
| T |
45248507 |
ttttcttacatcaagatgttcaatggaagaccagaggaattaaattctgatgcaaattttttgacagattccaatgaactgagatctaactccatgacat |
45248606 |
T |
|
| Q |
189 |
caagtttggctgagggaatgtccttgagtattgtatctttgacatctttagcagcaaccaagtttctcacacccataatcacatgaacaccgcgcaaagc |
288 |
Q |
| |
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||| ||| || |||||||| ||||| ||||||| || |||| ||| |||||||||||| |||| ||| ||||||||||||| ||||| |||||||| |
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| T |
45248607 |
caactttagccgagggaatctccttaagtattgcttcattgatatcattagcagcaaccttatttcgaacagccataatcacatggacaccacgcaaagc |
45248706 |
T |
|
| Q |
289 |
aaggacacgagcagtctcagcaccaatgccgctggatgctcctgtta |
335 |
Q |
| |
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||| ||||| | ||||||| | ||||| || |||| ||||||||||| |
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| T |
45248707 |
aagaacacgcgtagtctcaactccaataccactggttgctcctgtta |
45248753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 91 - 335
Target Start/End: Original strand, 45213564 - 45213808
Alignment:
| Q |
91 |
ttcttacatcaagatgttcagtggacgaccagaagaattatactcagatgcaaatttcttgacagagtccaatgagctgagatctaactccatggcatca |
190 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||||| |||||| | || |||||||||||||||||||| |||||||| |||||||||||||||||| ||||| |
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| T |
45213564 |
ttcttacatcaatatgttcaacggaagaccagaggaattaaattcggatgcaaatttcttgacagattccaatgaactgagatctaactccatgacatca |
45213663 |
T |
|
| Q |
191 |
agtttggctgagggaatgtccttgagtattgtatctttgacatctttagcagcaaccaagtttctcacacccataatcacatgaacaccgcgcaaagcaa |
290 |
Q |
| |
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| ||| ||||||||||| || || ||||||| ||| || || |||||| |||| ||||| ||| ||||||||||||| ||||| | ||||||| |
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|
| T |
45213664 |
atttttgctgagggaatctctttaagtattgcttctctggtattattagcattaaccttatttctaacagccataatcacatggacaccatgtaaagcaa |
45213763 |
T |
|
| Q |
291 |
ggacacgagcagtctcagcaccaatgccgctggatgctcctgtta |
335 |
Q |
| |
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| ||||| | |||||||| ||||| || |||||||||||||||| |
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|
| T |
45213764 |
gaacacgcgtagtctcagtgccaataccactggatgctcctgtta |
45213808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 45233529 - 45233565
Alignment:
| Q |
39 |
aataaaacagtaaaaataaatctgataattatatgac |
75 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45233529 |
aataaaacagtaaaaataaatctgataattatatgac |
45233565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 19278502 - 19278542
Alignment:
| Q |
251 |
tttctcacacccataatcacatgaacaccgcgcaaagcaag |
291 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||| ||||| |
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| T |
19278502 |
tttctcactcccataatcacatgaacaccacgcaaggcaag |
19278542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 19295907 - 19295947
Alignment:
| Q |
251 |
tttctcacacccataatcacatgaacaccgcgcaaagcaag |
291 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| ||||| |
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|
| T |
19295907 |
tttctcactcccataatcacatgaacaccacgcaaggcaag |
19295947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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