View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_66 (Length: 367)
Name: NF8208A_low_66
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_66 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 4591983 - 4591647
Alignment:
| Q |
1 |
gttcatgtgaaggatccgatccattttttcaaaacaaaataaaaatcatatgtagaatcctctcaaatcttttaggcagaaatactttgcagagattaat |
100 |
Q |
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| T |
4591983 |
gttcatgtgaaggatccgatccattttttcaaaacaaaataaaaatcatatgtagaatcctatcaaatcttgtaggcagaaatactttgcagagattaat |
4591884 |
T |
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| Q |
101 |
tgctgagcactgacggtgtaaagcttttttacgcgtagaatcttatcaaatcaccccatgtttat---attttgagatatttaaggaagtaacctaaaca |
197 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
4591883 |
tgctgaaaactgacggtgtaaagcttttttacgcgttgaatcttatcagatcaccccatgtttattatattttgagatatttgaggaagtaacctaaaca |
4591784 |
T |
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| Q |
198 |
attggcattatgatatggcttgattggatgcatgtataaaacagttttacaaccctcgttaaaagacaagggacagatattgtcttgtgcaaattcaaat |
297 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4591783 |
attgccattatgacatggcttgattggatgcatgtataaaacagttttacaaccctcgttaaaagacaagggagagatattgtcttgtgcaaattcaaat |
4591684 |
T |
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| Q |
298 |
acttaatattttcatgatgtgaaaatttggactgatt |
334 |
Q |
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| T |
4591683 |
atttaatattttcatgatgtgaaaatttggactgatt |
4591647 |
T |
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