View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208A_low_67 (Length: 365)

Name: NF8208A_low_67
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208A_low_67
NF8208A_low_67
[»] chr4 (3 HSPs)
chr4 (7-334)||(5313554-5313886)
chr4 (102-208)||(16839429-16839535)
chr4 (11-201)||(11355130-11355322)
[»] chr1 (2 HSPs)
chr1 (8-210)||(30737674-30737880)
chr1 (120-247)||(28451574-28451701)
[»] chr6 (1 HSPs)
chr6 (102-315)||(7499954-7500168)
[»] chr2 (3 HSPs)
chr2 (102-208)||(45495640-45495746)
chr2 (102-208)||(45503382-45503488)
chr2 (111-292)||(5986920-5987101)
[»] chr5 (2 HSPs)
chr5 (192-334)||(33050399-33050542)
chr5 (102-315)||(9504983-9505197)
[»] scaffold0014 (1 HSPs)
scaffold0014 (102-201)||(62533-62632)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 7 - 334
Target Start/End: Complemental strand, 5313886 - 5313554
Alignment:
Q  7 gaaagttctcttctttgacaatggagccttcaagatcaatctattcttgcaataaaaaa-cccttatagcatgtgcttccattttcgtagtaga--catt 103  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |  ||||    
T  5313886 gaaagttttcttctttgacaatggagccttcaagatcaatctattcttgcaataaaaaaacccttgtagcatgtgcttccattttcatagtatatacatt 5313787  T
Q  104 ttgcagcaattggcctatactaatgagattacttctcatatttggtacatataatacatcagtaatagatgttttcttgccatcttttctatgaatcaat 203  Q
    |||||||||||||||| |||||||||||||||||||||||||| | ||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  5313786 ttgcagcaattggcctgtactaatgagattacttctcatattttgaacatacaatacatcagtgatatatgttttcttgccatcttttctatgaatcaat 5313687  T
Q  204 actttactagttcttttaacacaaactatactattatttgcaaatcttgtcttttcgctaattgaatcatctaactcggagaaccaagac--ttttacat 301  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||| ||||||||||||  |||||| |    
T  5313686 actttactagttcctttaacacaaactatactattatttgcaaatcttgtctttttactaattgaaccatctaactcagagaaccaagacttttttacct 5313587  T
Q  302 gtcatgtgatttgagcatcgtgtatccagatac 334  Q
    ||||| |||||||||||||||||||||| ||||    
T  5313586 gtcatatgatttgagcatcgtgtatccatatac 5313554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 208
Target Start/End: Original strand, 16839429 - 16839535
Alignment:
Q  102 ttttgcagcaattggcctatactaatgagattacttctcatatttggtacatataatacatcagtaatagatgttttcttgccatcttttctatgaatca 201  Q
    |||||||| ||||| || |||||||||||||| |||||||| ||||||||||| || |||||||| ||  | | |||||||||||| ||  |||||||||    
T  16839429 ttttgcagtaattgaccaatactaatgagattgcttctcatgtttggtacatacaacacatcagtgatgcaagctttcttgccatccttcttatgaatca 16839528  T
Q  202 atacttt 208  Q
     ||||||    
T  16839529 gtacttt 16839535  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 11 - 201
Target Start/End: Original strand, 11355130 - 11355322
Alignment:
Q  11 gttctcttctttgacaatggagccttcaagatcaatctattcttgcaataaaaaacccttatagcatgtgcttccattttcgtagtaga--cattttgca 108  Q
    ||||| |||||||||||||||||||| |  ||||||||  ||||||  | ||||||| | ||||  ||| | ||||||||| ||||| |  | || ||||    
T  11355130 gttcttttctttgacaatggagcctttagaatcaatcttctcttgctgtcaaaaaccatcatagtttgttcctccattttcatagtatagcctttctgca 11355229  T
Q  109 gcaattggcctatactaatgagattacttctcatatttggtacatataatacatcagtaatagatgttttcttgccatcttttctatgaatca 201  Q
      || || ||||||||||||||||||||  |||| ||||| |||||||| ||| |||||||  | | ||||||||||||||| | ||||||||    
T  11355230 ataactgacctatactaatgagattactcttcatgtttggcacatataacacaccagtaatgcaagctttcttgccatctttcccatgaatca 11355322  T

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Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 30737880 - 30737674
Alignment:
Q  8 aaagttctcttctttgacaatggagccttcaagatcaatctattcttgcaataaaaaa--cccttatagcatgtgcttccattttcgtagtaga--catt 103  Q
    |||||||||| ||||||||| || || |||| |||||| |||| ||| ||||||||||  |||| ||||  | ||||||||| ||  ||| | |  | ||    
T  30737880 aaagttctctgctttgacaacggggctttcaggatcaacctatccttccaataaaaaaaaccctcatagtttttgcttccatcttaatagcacaaccctt 30737781  T
Q  104 ttgcagcaattggcctatactaatgagattacttctcatatttggtacatataatacatcagtaatagatgttttcttgccatcttttctatgaatcaat 203  Q
    |||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |||||| | ||| ||| ||||||||||| ||||||||||||||||    
T  30737780 ttgcagtaattgacctatactaatgagattacttctcatatttggcacatataacacatcaatgatacatgctttcttgccattttttctatgaatcaat 30737681  T
Q  204 actttac 210  Q
    |||||||    
T  30737680 actttac 30737674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 120 - 247
Target Start/End: Original strand, 28451574 - 28451701
Alignment:
Q  120 atactaatgagattacttctcatatttggtacatataatacatcagtaatagatgttttcttgccatcttttctatgaatcaatactttactagttcttt 219  Q
    ||||| || ||||| |||||||||||| | ||||| || |||| ||| ||| ||| |||||||||||||||| | |||||   |||||||| | ||| ||    
T  28451574 atactcataagattgcttctcatatttagcacataaaacacataagtgatatatgctttcttgccatcttttatgtgaattggtactttaccaattcctt 28451673  T
Q  220 taacacaaactatactattatttgcaaa 247  Q
     | |||| ||||| ||||||| ||||||    
T  28451674 cagcacacactattctattatctgcaaa 28451701  T

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Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 102 - 315
Target Start/End: Original strand, 7499954 - 7500168
Alignment:
Q  102 ttttgcagcaattggcctatactaatgagattacttctcatatttggtacatataatacatcagtaatagatgttttcttgccatcttttctatgaatca 201  Q
    |||||||| ||||  || |||||||||||||| |||||||| ||||||||||| || |||||||| ||  | | ||||||| |||| || ||||||||||    
T  7499954 ttttgcagtaattaaccaatactaatgagattgcttctcatgtttggtacatacaacacatcagtgatgcaagctttcttgtcatccttcctatgaatca 7500053  T
Q  202 atactttactagttcttttaacacaaactatactattatttgcaaatcttgtcttttcgctaattgaatcatctaactcggagaaccaagactt-ttaca 300  Q
     |||||| | | | |  |   |||||||||||| ||| | |||||||||| | |||    ||| |||||||||||| || ||||||||||| || || ||    
T  7500054 gtactttcccaataccatctgcacaaactatacgattctctgcaaatcttatttttctattaactgaatcatctaattcagagaaccaagatttcttgca 7500153  T
Q  301 tgtcatgtgatttga 315  Q
    |||||||||||||||    
T  7500154 tgtcatgtgatttga 7500168  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 208
Target Start/End: Original strand, 45495640 - 45495746
Alignment:
Q  102 ttttgcagcaattggcctatactaatgagattacttctcatatttggtacatataatacatcagtaatagatgttttcttgccatcttttctatgaatca 201  Q
    |||||||| ||||| || |||||||||||||| |||||||| ||||||||||| || |||||| | ||  | | |||||||||||| || ||||||||||    
T  45495640 ttttgcagtaattgaccaatactaatgagattgcttctcatgtttggtacatacaacacatcaatgatgcaagctttcttgccatccttcctatgaatca 45495739  T
Q  202 atacttt 208  Q
     ||||||    
T  45495740 gtacttt 45495746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 208
Target Start/End: Original strand, 45503382 - 45503488
Alignment:
Q  102 ttttgcagcaattggcctatactaatgagattacttctcatatttggtacatataatacatcagtaatagatgttttcttgccatcttttctatgaatca 201  Q
    |||||||| ||||| || |||||||||||||| |||||||| ||||||||||| || |||||| | ||  | | |||||||||||| || ||||||||||    
T  45503382 ttttgcagtaattgaccaatactaatgagattgcttctcatgtttggtacatacaacacatcaatgatgcaagctttcttgccatccttcctatgaatca 45503481  T
Q  202 atacttt 208  Q
     ||||||    
T  45503482 gtacttt 45503488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 292
Target Start/End: Complemental strand, 5987101 - 5986920
Alignment:
Q  111 aattggcctatactaatgagattacttctcatatttggtacatataatacatcagtaatagatgttttcttgccatcttttctatgaatcaatactttac 210  Q
    ||||| || |||||||||||| |  ||||||| ||||||||||| || |||||||| ||  | | |||||||||||| || |||||||||| |||||| |    
T  5987101 aattgaccaatactaatgagactgtttctcatgtttggtacatacaacacatcagtgatgcaagctttcttgccatccttcctatgaatcagtacttttc 5987002  T
Q  211 tagttcttttaacacaaactatactattatttgcaaatcttgtcttttcgctaattgaatcatctaactcggagaaccaaga 292  Q
     | |  |     |||||||||||||||| | |||||||||| | |||  | ||| |||||||||||| || |||||||||||    
T  5987001 caatattagctgcacaaactatactattgtctgcaaatcttatttttctgttaactgaatcatctaattcagagaaccaaga 5986920  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 334
Target Start/End: Complemental strand, 33050542 - 33050399
Alignment:
Q  192 ctatgaatcaatactttactagttcttttaacacaaactatactattatttgcaaatcttgtcttttcgctaattgaatcatctaactcggagaaccaag 291  Q
    ||||||||||| || |||| | ||| || |||| || | |||||||||| ||| |||||| |||||    ||||||||| |||||| |  ||| ||||||    
T  33050542 ctatgaatcaacacattaccatttccttcaacataatcgatactattatctgcgaatcttatctttctattaattgaataatctaatttagagtaccaag 33050443  T
Q  292 actttta-catgtcatgtgatttgagcatcgtgtatccagatac 334  Q
    ||||||| ||||| |||| ||||||||||| |||||||||||||    
T  33050442 acttttaacatgttatgtaatttgagcatcatgtatccagatac 33050399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 102 - 315
Target Start/End: Complemental strand, 9505197 - 9504983
Alignment:
Q  102 ttttgcagcaattggcctatactaatgagattacttctcatatttggtacatataatacatcagtaatagatgttttcttgccatcttttctatgaatca 201  Q
    ||||| || ||||| || |||||||||||||| |||||||| ||||||||||| || |||||||| ||  | | ||||||| |||| || |||||||| |    
T  9505197 ttttgtagtaattgaccaatactaatgagattgcttctcatgtttggtacatacaacacatcagtgatgcaagctttcttgacatccttcctatgaatta 9505098  T
Q  202 atactttactagttcttttaacacaaactatactattatttgcaaatcttgtcttttcgctaattgaatcatctaactcggagaaccaagactt-ttaca 300  Q
     |||||| | | | |      ||||||||||| |||| | |||||||||| | |||    ||| |||||||||||| || ||||||||||| || || ||    
T  9505097 gtactttcccaataccagctgcacaaactataatattgtctgcaaatcttatttttctattaactgaatcatctaattcagagaaccaagatttcttgca 9504998  T
Q  301 tgtcatgtgatttga 315  Q
    |||||||||||||||    
T  9504997 tgtcatgtgatttga 9504983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 201
Target Start/End: Complemental strand, 62632 - 62533
Alignment:
Q  102 ttttgcagcaattggcctatactaatgagattacttctcatatttggtacatataatacatcagtaatagatgttttcttgccatcttttctatgaatca 201  Q
    |||||||  ||||| || |||||| ||||||| |||||||| ||||||||||| || |||||||| ||  | | | |||||||||| || ||||||||||    
T  62632 ttttgcaataattgaccaatactactgagattgcttctcatgtttggtacatacaacacatcagtgatgcaggctctcttgccatccttcctatgaatca 62533  T

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