View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208A_low_68 (Length: 365)

Name: NF8208A_low_68
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208A_low_68
NF8208A_low_68
[»] chr7 (5 HSPs)
chr7 (2-355)||(45341209-45341560)
chr7 (77-217)||(4548267-4548409)
chr7 (62-246)||(6011403-6011586)
chr7 (75-138)||(11622442-11622506)
chr7 (130-192)||(19432388-19432449)
[»] chr3 (4 HSPs)
chr3 (72-282)||(19800545-19800754)
chr3 (289-353)||(14258960-14259023)
chr3 (134-193)||(25387029-25387088)
chr3 (198-282)||(16019052-16019136)
[»] chr8 (7 HSPs)
chr8 (61-282)||(24819942-24820160)
chr8 (130-284)||(15061971-15062124)
chr8 (65-217)||(15662802-15662954)
chr8 (111-228)||(15550776-15550892)
chr8 (138-280)||(16723492-16723632)
chr8 (293-356)||(15061821-15061884)
chr8 (59-180)||(22502004-22502125)
[»] chr4 (4 HSPs)
chr4 (116-282)||(16673431-16673597)
chr4 (64-244)||(18448904-18449084)
chr4 (284-356)||(16673668-16673740)
chr4 (289-353)||(41806064-41806127)
[»] scaffold0035 (1 HSPs)
scaffold0035 (66-284)||(71223-71437)
[»] scaffold0113 (1 HSPs)
scaffold0113 (73-279)||(24134-24339)
[»] scaffold0338 (1 HSPs)
scaffold0338 (131-284)||(18545-18696)
[»] chr5 (2 HSPs)
chr5 (117-284)||(26058031-26058196)
chr5 (131-244)||(19079584-19079696)
[»] scaffold0001 (1 HSPs)
scaffold0001 (3-48)||(420420-420465)
[»] chr6 (6 HSPs)
chr6 (73-279)||(12331737-12331940)
chr6 (132-282)||(23846137-23846286)
chr6 (289-356)||(15483019-15483086)
chr6 (200-279)||(20891709-20891788)
chr6 (75-216)||(22541477-22541618)
chr6 (291-356)||(23846374-23846438)
[»] chr2 (2 HSPs)
chr2 (230-284)||(16592297-16592351)
chr2 (111-244)||(28579640-28579771)


Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 2 - 355
Target Start/End: Complemental strand, 45341560 - 45341209
Alignment:
Q  2 catgaatttaattgttggtgatgtgatgacctcttgatgttgaaatgaaaattgatgtgttatgattgattttaagataatattcacatgatgttagtat 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45341560 catgaatttaattgttggtgatgtgatgacctcttgatgttgaaatgaaaattgatgtgttatgattgattttaagataatattcacatgatgttagtat 45341461  T
Q  102 tatgggataatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaaccccttaatg 201  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45341460 tatgggatgatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaacccctcaatg 45341361  T
Q  202 gtcgtttggttgaccgtttcgccatttttataaatggtgtagatgacgtgcaggtttgagttcgtattgcttgtgagtgcttgggacttatgctatgtat 301  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  45341360 gtcgtttggttgaccgtttcgccatttttataaatggtgtagacgacgtgcaagtttgagttcgtattgcttgtgagtgcttgggacttatgctatgtat 45341261  T
Q  302 ttatattattgccgagacttgttgtttatttatgtatgagatttgagatattgt 355  Q
    |||||||||||||  || ||||| |||||||||||||||||||| |||||||||    
T  45341260 ttatattattgcc--gaattgttttttatttatgtatgagattttagatattgt 45341209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 77 - 217
Target Start/End: Complemental strand, 4548409 - 4548267
Alignment:
Q  77 gataatattcacatgatgttagtattatgggataatgaacatgtgtat----atgtgatacttgaaatccttgaatgctatttctttgattatattttat 172  Q
    ||||||||||||||||||| |||||||| ||||| ||| ||||| |||    || ||||  |||||||||||||||||| |||||||||||||||| |||    
T  4548409 gataatattcacatgatgtcagtattataggatattgagcatgtatatctatatatgatgattgaaatccttgaatgct-tttctttgattatattgtat 4548311  T
Q  173 tatgtgaaatactatttaaccccttaatggtcgtttggttgaccg 217  Q
    |||||| |||| ||| | ||||| |||| ||||||||||||||||    
T  4548310 tatgtggaatattatctcacccc-taatagtcgtttggttgaccg 4548267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 246
Target Start/End: Original strand, 6011403 - 6011586
Alignment:
Q  62 tatgattgattttaagataatattcacatgatgttagtatt-atgggataatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttg 160  Q
    ||||||||  || ||||| ||||||| | |||||||||||| | || || ||||| |||| | |||||||||  |||| || | ||||| ||| ||| ||    
T  6011403 tatgattggattgaagatgatattcataagatgttagtattcaaggaatgatgaatatgtatgtatgtgatatgtgaa-tcgtagaatgttatatctatg 6011501  T
Q  161 attatattttattatgtgaaatactatttaaccccttaatggtcgtttggttgaccgtttcgccatttttataaatggtgtagatg 246  Q
     |||||| || ||||||||| || ||| |||||||| | | ||||||||||||||||  || |||||| || ||||||||||||||    
T  6011502 cttatatctttttatgtgaa-tattatctaacccctcagttgtcgtttggttgaccgcctcaccatttctaaaaatggtgtagatg 6011586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 11622442 - 11622506
Alignment:
Q  75 aagataatattcacatgatgttagtattatggga-taatgaacatgtgtatatgtgatacttgaa 138  Q
    ||||||||||| | |||||||||||||| | ||| | |||||||||| |||||||||||||||||    
T  11622442 aagataatatttatatgatgttagtattttaggaatgatgaacatgtatatatgtgatacttgaa 11622506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 19432388 - 19432449
Alignment:
Q  130 atacttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaac 192  Q
    |||||||||||| |||||||||||||  |||||||||||||||||| || |||| ||| ||||    
T  19432388 atacttgaaatcattgaatgctattt-attgattatattttattatatggaatattatctaac 19432449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 72 - 282
Target Start/End: Complemental strand, 19800754 - 19800545
Alignment:
Q  72 tttaagataatattcacatgatgttagtattatgggataatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttgattatatttta 171  Q
    |||| |||||||||| ||||||| ||||||| | |||| |||| ||||| |||||||| || ||||||||||||||||||||||||||||||| ||||||    
T  19800754 tttatgataatattcgcatgatgatagtattctaggatgatgagcatgtatatatgtggtatttgaaatccttgaatgctatttctttgattagatttta 19800655  T
Q  172 ttatgtgaaatactatttaaccccttaatggtcgtttggttgaccgtttcgccatttttataaatggtgtagatgacgtgcaggtttgagttcgtattgc 271  Q
    ||||||| |||| ||| | ||||   | |||| ||||||||||| |  ||||||||||||| ||||||||| | |||||||||||||||||| | |||||    
T  19800654 ttatgtggaatattatctcacccaccagtggttgtttggttgactgcctcgccatttttat-aatggtgtacacgacgtgcaggtttgagtttgcattgc 19800556  T
Q  272 ttgtgagtgct 282  Q
    |||| ||||||    
T  19800555 ttgtaagtgct 19800545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 289 - 353
Target Start/End: Complemental strand, 14259023 - 14258960
Alignment:
Q  289 ttatgctatgtatttatattattgccgagacttgttgtttatttatgtatgagatttgagatatt 353  Q
    ||||| ||||||||||||||||||  |||||||||||| || |||||||||||||||||||||||    
T  14259023 ttatgttatgtatttatattattgatgagacttgttgtcta-ttatgtatgagatttgagatatt 14258960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 25387029 - 25387088
Alignment:
Q  134 ttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaacc 193  Q
    |||||||| ||||||| |||||| || ||||||||||||||||||||||  |||||||||    
T  25387029 ttgaaatctttgaatgttatttcctttattatattttattatgtgaaatgttatttaacc 25387088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 282
Target Start/End: Original strand, 16019052 - 16019136
Alignment:
Q  198 aatggtcgtttggttgaccgtttcgccatttttataaatggtgtagatgacgtgcaggtttgagttcgtattgcttgtgagtgct 282  Q
    ||||||| |||||||||||   |  |||||| |||||||||||| || |||||||| |||||||||| | ||| |||||||||||    
T  16019052 aatggtcatttggttgaccacctacccatttgtataaatggtgtggacgacgtgcatgtttgagttcttgttgtttgtgagtgct 16019136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 61 - 282
Target Start/End: Original strand, 24819942 - 24820160
Alignment:
Q  61 ttatgattgattttaagataatattcacatgatgttagtattatgggataatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttg 160  Q
    |||| |||||||||| || |||||||| | |||||||||||| | |||| |||| ||||| ||||||||||  ||||||||||||||| |||||| | ||    
T  24819942 ttatcattgattttatgacaatattcatacgatgttagtattctaggatgatgagcatgtatatatgtgatgtttgaaatccttgaattctattt-tgtg 24820040  T
Q  161 attatattttattatgtgaaatactatttaaccccttaatggtcgtttggttgaccgtttcgccatttttataaatggtgtagatgacgtgcaggtttga 260  Q
     || ||||||| |||||| |||| ||| |||| ||| | | ||||||||||||||||  || |||||| |||||||||||||||||||||||||||||||    
T  24820041 cttttattttactatgtggaatattatctaactcct-agttgtcgtttggttgaccgcctcaccatttgtataaatggtgtagatgacgtgcaggtttga 24820139  T
Q  261 gttcgtattgcttgtgagtgct 282  Q
    | ||||||||||||||||||||    
T  24820140 g-tcgtattgcttgtgagtgct 24820160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 130 - 284
Target Start/End: Complemental strand, 15062124 - 15061971
Alignment:
Q  130 atacttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaaccccttaatggtcgtttggttgaccgtttcgccatttt 229  Q
    ||||||||||||||||| ||  ||||  ||||||||||||||||||||| |||| ||| |||||  | | |||| |||||||||||||  |  ||||||     
T  15062124 atacttgaaatccttgactgtcatttacttgattatattttattatgtggaatattatctaacct-tcagtggttgtttggttgaccgcctacccatttg 15062026  T
Q  230 tataaatggtgtagatgacgtgcaggtttgagttcgtattgcttgtgagtgcttg 284  Q
    ||| ||||||||||| |||||||| | |||||||| |||||||||||||||||||    
T  15062025 tatgaatggtgtagacgacgtgcatgattgagttcctattgcttgtgagtgcttg 15061971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 217
Target Start/End: Original strand, 15662802 - 15662954
Alignment:
Q  65 gattgattttaagataatattcacatgatgttagtattatggga-taatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttgatt 163  Q
    |||||| || ||||||||||||| | |||||||||||| | ||| || ||| ||||| ||||||||||||||||||  || ||||||||||| | || ||    
T  15662802 gattgaattgaagataatattcatacgatgttagtattctaggaatattgagcatgtatatatgtgatacttgaaaatctagaatgctatttttgtgctt 15662901  T
Q  164 atattttattatgtgaaatactatttaaccccttaatggtcgtttggttgaccg 217  Q
     ||| || ||||||| |||| ||| ||||||| || ||||||||||||||||||    
T  15662902 gtatctttttatgtg-aatattatctaaccccctagtggtcgtttggttgaccg 15662954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 111 - 228
Target Start/End: Original strand, 15550776 - 15550892
Alignment:
Q  111 atgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaaccccttaatggtcgtttgg 210  Q
    |||| ||||| |||||||||| ||||||||  | ||||||||||| | ||||||||| || ||||||| |||| ||| ||||| |||| |||||||||||    
T  15550776 atgagcatgtatatatgtgattcttgaaattatagaatgctatttttgtgattatatatttttatgtg-aatattatataacctcttagtggtcgtttgg 15550874  T
Q  211 ttgaccgtttcgccattt 228  Q
    ||||| || || ||||||    
T  15550875 ttgactgtctcaccattt 15550892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 280
Target Start/End: Complemental strand, 16723632 - 16723492
Alignment:
Q  138 aatccttgaatgctatttctttgattatattttattatgtgaaatactatttaaccccttaatggtcgtttggttgaccgtttcgccatttttataaatg 237  Q
    |||| |||||| ||||| |||||||| |||||||| || ||||||| ||| ||||| | |  |||||||||| || ||||  |  |||||| ||| ||||    
T  16723632 aatcattgaattctattactttgattttattttatcatatgaaatattatctaacctcat--tggtcgtttgatttaccgcctacccatttgtatgaatg 16723535  T
Q  238 gtgtagatgacgtgcaggtttgagttcgtattgcttgtgagtg 280  Q
    |||||||  ||||||||  |||||| |||||||||||||||||    
T  16723534 gtgtagacaacgtgcagacttgagtccgtattgcttgtgagtg 16723492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 293 - 356
Target Start/End: Complemental strand, 15061884 - 15061821
Alignment:
Q  293 gctatgtatttatattattgccgagacttgttgtttatttatgtatgagatttgagatattgtt 356  Q
    ||||||||||||| ||||||  |||||||| ||| ||||||||| ||| |||||||||||||||    
T  15061884 gctatgtatttattttattgatgagacttgctgtctatttatgtctgaaatttgagatattgtt 15061821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 180
Target Start/End: Original strand, 22502004 - 22502125
Alignment:
Q  59 tgttatgattgattttaagataatattcacatgatgttagtattat-gggataatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttct 157  Q
    |||||||||||| || |||||||||||||  ||||| ||||||| | || || |||| ||||| ||||||||||| ||| |||||| ||||| ||| | |    
T  22502004 tgttatgattgaattaaagataatattcatgtgatggtagtattctaggaatgatgagcatgtatatatgtgatatttg-aatcctagaatgttatattt 22502102  T
Q  158 ttgattatattttattatgtgaa 180  Q
     || |||||| || |||||||||    
T  22502103 gtgcttatatatttttatgtgaa 22502125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 116 - 282
Target Start/End: Original strand, 16673431 - 16673597
Alignment:
Q  116 catgtgtatatgtgatacttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaaccccttaatggtcgtttggttgac 215  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||| ||||  |  | |||||||||||||||     
T  16673431 catgtatatatttgatacttgaaatccttgaatgctatttctttgattaaattttattatgtggaatattatctaacatcccagtggtcgtttggttgag 16673530  T
Q  216 cgtttcgccatttttataaatggtgtagatgacgtgcaggtttgagttcgtattgcttgtgagtgct 282  Q
    |   || | |||| || ||||||||||||  || |||||||||||||||||||| ||||||||||||    
T  16673531 cacctcactatttctaaaaatggtgtagacaacatgcaggtttgagttcgtattacttgtgagtgct 16673597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 244
Target Start/End: Complemental strand, 18449084 - 18448904
Alignment:
Q  64 tgattgattttaagataatattcacatgatgttagtattatggga-taatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttgat 162  Q
    ||||||| || |||||||||||||||||||||||||||| |  || || ||  |||||  |||||||||||||||||| ||  ||||||| || | || |    
T  18449084 tgattgagttgaagataatattcacatgatgttagtattgtaagaatattgtgcatgtaaatatgtgatacttgaaattctataatgctacttttgtgct 18448985  T
Q  163 tatattttattatgtgaaatactatttaaccccttaatggtcgtttggttgaccgtttcgccatttttataaatggtgtaga 244  Q
    ||||  || ||||||||| || ||| ||||||| || ||||||||| ||||||||  || |||||| || ||||||||||||    
T  18448984 tatacgtttttatgtgaa-tattatctaaccccctagtggtcgtttagttgaccgcctcaccatttataaaaatggtgtaga 18448904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 284 - 356
Target Start/End: Original strand, 16673668 - 16673740
Alignment:
Q  284 gggacttatgctatgtatttatattattgccgagacttgttgtttatttatgtatgagatttgagatattgtt 356  Q
    |||||||||| | ||||||||| |||||||  | ||||||||||||||||||| | |||||||||||||||||    
T  16673668 gggacttatgttgtgtatttatgttattgctaaaacttgttgtttatttatgtctaagatttgagatattgtt 16673740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 289 - 353
Target Start/End: Complemental strand, 41806127 - 41806064
Alignment:
Q  289 ttatgctatgtatttatattattgccgagacttgttgtttatttatgtatgagatttgagatatt 353  Q
    |||||||||| |||||||||| |||||||||||||| | || |||||| ||||||||||||||||    
T  41806127 ttatgctatgcatttatattactgccgagacttgttatcta-ttatgtctgagatttgagatatt 41806064  T

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Target: scaffold0035 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 66 - 284
Target Start/End: Original strand, 71223 - 71437
Alignment:
Q  66 attgattttaagataatattcacatgatgttagtattatgggataatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttgattat 165  Q
    ||||| |||| |||||||||| ||||||||||||||| | |||| ||||| |||| | ||||| ||||||||||| |||||||||   ||||||||||||    
T  71223 attgagtttaggataatattcgcatgatgttagtattctaggatgatgaatatgtatgtatgtaatacttgaaattcttgaatgc---ttctttgattat 71319  T
Q  166 attttattatgtgaaatactatttaaccccttaatggtcgtttggttgaccgtttcgccatttttataaatggtgtagatgacgtgcaggtttgagttcg 265  Q
    || |||||||||| |||| ||| ||| |||| | ||||||||||||||||||  |  |||||| |||||||| |||||| |  ||||| | |  |||||     
T  71320 atcttattatgtggaatattatctaa-ccctcactggtcgtttggttgaccgcctacccatttgtataaatgttgtagacggtgtgcatgatcaagttct 71418  T
Q  266 tattgcttgtgagtgcttg 284  Q
    |||||||||||||||||||    
T  71419 tattgcttgtgagtgcttg 71437  T

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Target: scaffold0113 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 73 - 279
Target Start/End: Original strand, 24134 - 24339
Alignment:
Q  73 ttaagataatattcacatgatgttagtattatggga-taatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttgattatatttta 171  Q
    |||||||||||||||||||||||||||||| | ||| | ||||| |||| ||| ||  |||||||||||||||||||| ||||| | |||||||||||||    
T  24134 ttaagataatattcacatgatgttagtattctaggagtgatgaatatgtatatgtgctatacttgaaatccttgaatgttattt-tatgattatatttta 24232  T
Q  172 ttatgtgaaatactatttaaccccttaatggtcgtttggttgaccgtttcgccatttttataaatggtgtagatgacgtgcaggtttgagttcgtattgc 271  Q
    |||||||||||  ||| ||| |||| | |||| |||||||||||||  |  |||||| ||| ||||||||||| |||||||| | |||||  | |||||     
T  24233 ttatgtgaaatgttatctaa-ccctcagtggttgtttggttgaccgcctacccatttgtatgaatggtgtagacgacgtgcatgattgagaacttattgt 24331  T
Q  272 ttgtgagt 279  Q
    ||||||||    
T  24332 ttgtgagt 24339  T

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Target: scaffold0338 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 131 - 284
Target Start/End: Original strand, 18545 - 18696
Alignment:
Q  131 tacttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaaccccttaatggtcgtttggttgaccgtttcgccattttt 230  Q
    ||||||||||||||||||||| ||| | |||||||||||||||||||| |||| ||| |||||| | | ||||||||||||||||||| |  |||||| |    
T  18545 tacttgaaatccttgaatgctgttt-tatgattatattttattatgtggaatattatctaaccc-tcagtggtcgtttggttgaccgtctacccatttgt 18642  T
Q  231 ataaatggtgtagatgacgtgcaggtttgagttcgtattgcttgtgagtgcttg 284  Q
    || ||||||||| | | |||||| | |||||||| |||| ||||||||||||||    
T  18643 atgaatggtgtaaacggcgtgcatgattgagttcttatttcttgtgagtgcttg 18696  T

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Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 117 - 284
Target Start/End: Complemental strand, 26058196 - 26058031
Alignment:
Q  117 atgtgtatatgtgatacttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaaccccttaatggtcgtttggttgacc 216  Q
    |||||||| | | |||||||||||||||||||| ||||| | |||||||||||||||||||| |||| ||| |||||||| | ||||| ||||||||| |    
T  26058196 atgtgtatgtataatacttgaaatccttgaatgatattt-tatgattatattttattatgtggaatattatctaacccct-agtggtcatttggttgatc 26058099  T
Q  217 gtttcgccatttttataaatggtgtagatgacgtgcaggtttgagttcgtattgcttgtgagtgcttg 284  Q
    |  |  |||||| ||||||||||||||| |  ||||| | |||||||| |||||||| | ||||||||    
T  26058098 gcctacccatttgtataaatggtgtagacggagtgcatgattgagttcttattgcttataagtgcttg 26058031  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 244
Target Start/End: Original strand, 19079584 - 19079696
Alignment:
Q  131 tacttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaaccccttaatggtcgtttggttgaccgtttcgccattttt 230  Q
    ||||| |||||||  |||||||||||| || |||||| || ||||||||| |  ||| ||||| |  | |||| |||||||||||||  || ||||||||    
T  19079584 tactttaaatcctataatgctatttctgtgcttatatctttttatgtgaa-tgttatctaacctcccagtggttgtttggttgaccggctcaccattttt 19079682  T
Q  231 ataaatggtgtaga 244  Q
    | ||||||||||||    
T  19079683 aaaaatggtgtaga 19079696  T

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Target: scaffold0001 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 420465 - 420420
Alignment:
Q  3 atgaatttaattgttggtgatgtgatgacctcttgatgttgaaatg 48  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  420465 atgaatttaattattggtgatgtgatgacctcttgatgttgaaatg 420420  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 279
Target Start/End: Original strand, 12331737 - 12331940
Alignment:
Q  73 ttaagataatattcacatgatgttagtattatggga-taatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttgattatatttta 171  Q
    ||||||||||||||| |||||||||||||| | ||| | ||||| |||| ||| ||  |||||  ||||||| |||| |||||| | || ||||||||||    
T  12331737 ttaagataatattcatatgatgttagtattctaggagtgatgaatatgtatatgtgctatacta-aaatcctagaattctattt-tatgtttatatttta 12331834  T
Q  172 ttatgtgaaatactatttaaccccttaatggtcgtttggttgaccgtttcgccatttttataaatggtgtagatgacgtgcaggtttgagttcgtattgc 271  Q
    ||||||| ||||  || |||||||  | ||||||||| ||||||||  |  |||||| ||| ||||||||||| ||| || | | || ||||| ||||||    
T  12331835 ttatgtggaatataatctaacccc--agtggtcgtttagttgaccgcctacccatttgtatgaatggtgtagacgacatgtatgattaagttcttattgc 12331932  T
Q  272 ttgtgagt 279  Q
    ||||||||    
T  12331933 ttgtgagt 12331940  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 282
Target Start/End: Original strand, 23846137 - 23846286
Alignment:
Q  132 acttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaaccccttaatggtcgtttggttgaccgtttcgccattttta 231  Q
    ||||||||||| |||||| ||||| | || ||||||||||| |||||||||| ||| | ||||   | ||||||||||||| ||||  |  | ||||| |    
T  23846137 acttgaaatccatgaatgttattt-tatgtttatattttatcatgtgaaatattatctcaccctccagtggtcgtttggttaaccgcattactattttaa 23846235  T
Q  232 taaatggtgtagatgacgtgcaggtttgagttcgtattgcttgtgagtgct 282  Q
     |||||||||||||  | |||| |||||| ||| ||||| |||||||||||    
T  23846236 aaaatggtgtagatagcatgcatgtttgatttcttattgattgtgagtgct 23846286  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 356
Target Start/End: Original strand, 15483019 - 15483086
Alignment:
Q  289 ttatgctatgtatttatattattgccgagacttgttgtttatttatgtatgagatttgagatattgtt 356  Q
    ||||| ||||||||||| ||  ||| ||||||| |||| || |||||| |||||||||||||||||||    
T  15483019 ttatgttatgtatttatgttgctgctgagacttattgtctagttatgtttgagatttgagatattgtt 15483086  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 279
Target Start/End: Complemental strand, 20891788 - 20891709
Alignment:
Q  200 tggtcgtttggttgaccgtttcgccatttttataaatggtgtagatgacgtgcaggtttgagttcgtattgcttgtgagt 279  Q
    ||||||||||||||||||  |  |||||| ||| ||||||||||| | |||||| | |||| ||| ||||||||||||||    
T  20891788 tggtcgtttggttgaccgcctacccatttgtatgaatggtgtagacggcgtgcatgattgatttcttattgcttgtgagt 20891709  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 216
Target Start/End: Complemental strand, 22541618 - 22541477
Alignment:
Q  75 aagataatattcacatgatgttagtattatgggata-atgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttgattatattttatt 173  Q
    ||||| ||||||| |||||||||||||| |  || | | || ||||| ||||||||||| |||||||||| ||||  | ||| | || |||||| || ||    
T  22541618 aagatgatattcatatgatgttagtattctatgaaagacgagcatgtttatatgtgataattgaaatcctagaatattgtttttgtgcttatatcttttt 22541519  T
Q  174 atgtgaaatactatttaaccccttaatggtcgtttggttgacc 216  Q
    ||||| |||| ||| ||||||| || ||||| |||||||||||    
T  22541518 atgtg-aatattatctaaccccctagtggtcatttggttgacc 22541477  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 23846374 - 23846438
Alignment:
Q  291 atgctatgtatttatattattgccgagacttgttgtttatttatgtatgagatttgagatattgtt 356  Q
    |||||||| |||||||||||||  |||||||| |||||| |||||| |||| || |||||||||||    
T  23846374 atgctatgcatttatattattgttgagacttg-tgtttaattatgtctgaggttggagatattgtt 23846438  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 16592297 - 16592351
Alignment:
Q  230 tataaatggtgtagatgacgtgcaggtttgagttcgtattgcttgtgagtgcttg 284  Q
    ||||||||||| ||| | |||||||| |||||||| ||||||| |||||||||||    
T  16592297 tataaatggtggagacggcgtgcaggattgagttcttattgctagtgagtgcttg 16592351  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 244
Target Start/End: Original strand, 28579640 - 28579771
Alignment:
Q  111 atgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaaccccttaatggtcgtttgg 210  Q
    |||| ||||| ||||||||||| ||||| ||||  |||||||| | | || |||||| || || |||||| || ||| |||||||  |||||||||||||    
T  28579640 atgagcatgtatatatgtgatatttgaa-tcctaaaatgctatatttgtgcttatatctttttgtgtgaa-tattatctaaccccacaatggtcgtttgg 28579737  T
Q  211 ttgaccgtttcgccatttttataaatggtgtaga 244  Q
    |||||| | || |||||| || |||| |||||||    
T  28579738 ttgaccatctctccatttgtaaaaatagtgtaga 28579771  T

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