View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208A_low_70 (Length: 363)

Name: NF8208A_low_70
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208A_low_70
NF8208A_low_70
[»] chr8 (7 HSPs)
chr8 (287-341)||(40127429-40127483)
chr8 (287-341)||(4239864-4239918)
chr8 (287-341)||(23083419-23083473)
chr8 (299-341)||(38184128-38184170)
chr8 (299-341)||(17023455-17023497)
chr8 (299-341)||(17553948-17553990)
chr8 (299-341)||(25369270-25369312)
[»] chr5 (7 HSPs)
chr5 (287-341)||(559975-560029)
chr5 (287-341)||(36939048-36939102)
chr5 (287-341)||(39521636-39521690)
chr5 (299-341)||(26670499-26670541)
chr5 (299-341)||(26942096-26942138)
chr5 (287-341)||(36426850-36426904)
chr5 (299-341)||(41999926-41999968)
[»] chr4 (5 HSPs)
chr4 (299-341)||(33465888-33465930)
chr4 (287-341)||(37261398-37261452)
chr4 (287-341)||(31271979-31272033)
chr4 (299-341)||(39318873-39318915)
chr4 (299-341)||(12877548-12877590)
[»] chr3 (7 HSPs)
chr3 (287-341)||(3686595-3686649)
chr3 (299-341)||(18470435-18470477)
chr3 (287-341)||(23662952-23663006)
chr3 (299-341)||(38206144-38206186)
chr3 (299-341)||(24756019-24756061)
chr3 (299-341)||(24765016-24765058)
chr3 (299-341)||(8886447-8886489)
[»] chr2 (7 HSPs)
chr2 (287-341)||(17972209-17972263)
chr2 (287-341)||(30649398-30649452)
chr2 (287-341)||(30654097-30654151)
chr2 (299-341)||(25480372-25480414)
chr2 (299-341)||(25487978-25488020)
chr2 (287-341)||(9182254-9182308)
chr2 (304-341)||(30616168-30616205)
[»] chr1 (4 HSPs)
chr1 (287-341)||(10138508-10138562)
chr1 (302-341)||(16750252-16750291)
chr1 (299-341)||(25853626-25853668)
chr1 (287-341)||(47453720-47453774)
[»] scaffold0070 (2 HSPs)
scaffold0070 (299-341)||(66013-66055)
scaffold0070 (299-341)||(61811-61853)
[»] scaffold0045 (1 HSPs)
scaffold0045 (299-341)||(81573-81615)
[»] chr6 (1 HSPs)
chr6 (299-341)||(12796301-12796343)
[»] chr7 (1 HSPs)
chr7 (299-341)||(21667780-21667822)


Alignment Details
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 40127483 - 40127429
Alignment:
Q  287 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  40127483 cctcctcaaggttctataacatctggtacgatgttttcataactatttctgatta 40127429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 4239918 - 4239864
Alignment:
Q  287 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  4239918 cctcctcgaggttctataacatctggtacgatgttttcataactatttctgatta 4239864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 23083473 - 23083419
Alignment:
Q  287 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  23083473 cctcctcgaggttctataacatctggtacgatgttttcataactatttctgatta 23083419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 341
Target Start/End: Complemental strand, 38184170 - 38184128
Alignment:
Q  299 tctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  38184170 tctataacatctcgtacgatgatttcataactatttctgatta 38184128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 17023455 - 17023497
Alignment:
Q  299 tctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    |||||||||||| |||| |||||||||||||||||||||||||    
T  17023455 tctataacatcttgtacaatgttttcataactatttctgatta 17023497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 17553948 - 17553990
Alignment:
Q  299 tctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    |||||||||||| |||| |||||||||||||||||||||||||    
T  17553948 tctataacatcttgtacaatgttttcataactatttctgatta 17553990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 341
Target Start/End: Complemental strand, 25369312 - 25369270
Alignment:
Q  299 tctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    ||||||||||| | || ||||||||||||||||||||||||||    
T  25369312 tctataacatcacatatgatgttttcataactatttctgatta 25369270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 559975 - 560029
Alignment:
Q  287 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  559975 cctcctcaaggttctataacatctggtacgatgttttcataactatttctgatta 560029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 36939102 - 36939048
Alignment:
Q  287 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  36939102 cctcctcgaggttctataacatctggtacgatgttttcataactatttctgatta 36939048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 39521636 - 39521690
Alignment:
Q  287 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  39521636 cctcctcgaggttctataacatctggtacgatgttttcataactatttctgatta 39521690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 26670499 - 26670541
Alignment:
Q  299 tctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  26670499 tctataacatctggtacgatgttttcataactatttctgatta 26670541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 26942096 - 26942138
Alignment:
Q  299 tctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  26942096 tctataacatctggtacgatgttttcataactatttctgatta 26942138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 36426850 - 36426904
Alignment:
Q  287 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||||||| ||||||    
T  36426850 cctcctcgaggttctataacatctggtacgatgttttcataactatttatgatta 36426904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 41999926 - 41999968
Alignment:
Q  299 tctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    |||||||||||| |||| |||||||||||||||||||||||||    
T  41999926 tctataacatctggtacaatgttttcataactatttctgatta 41999968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 341
Target Start/End: Complemental strand, 33465930 - 33465888
Alignment:
Q  299 tctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  33465930 tctataacatctcgtacgatgttttcataactatttctgatta 33465888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 37261452 - 37261398
Alignment:
Q  287 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    |||| |||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  37261452 cctcatcaaggttctataacatctggtacgatgttttcataactatttctgatta 37261398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 31271979 - 31272033
Alignment:
Q  287 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    |||| |||||| |||||||||||| ||||||||||||||||||||||| ||||||    
T  31271979 cctcatcaaggttctataacatctagtacgatgttttcataactatttttgatta 31272033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 39318873 - 39318915
Alignment:
Q  299 tctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  39318873 tctataacatctcgtatgatgttttcataactatttctgatta 39318915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 12877548 - 12877590
Alignment:
Q  299 tctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    ||||||||||||| || ||||||||||||||||||||||||||    
T  12877548 tctataacatctcatatgatgttttcataactatttctgatta 12877590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 3686595 - 3686649
Alignment:
Q  287 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  3686595 cctcctcgaggttctataacatctggtacgatgttttcataactatttctgatta 3686649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 18470435 - 18470477
Alignment:
Q  299 tctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  18470435 tctataacatctggtacgatgttttcataactatttctgatta 18470477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 23663006 - 23662952
Alignment:
Q  287 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    |||| |||||| |||||||||||| ||||||||||||||||||||||| ||||||    
T  23663006 cctcatcaaggttctataacatctagtacgatgttttcataactatttttgatta 23662952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 341
Target Start/End: Complemental strand, 38206186 - 38206144
Alignment:
Q  299 tctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  38206186 tctataacatcttgtacgatgttttcataactatttctgatta 38206144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 341
Target Start/End: Complemental strand, 24756061 - 24756019
Alignment:
Q  299 tctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    ||||||||||| |||| ||||||||||||||||||||||||||    
T  24756061 tctataacatcacgtatgatgttttcataactatttctgatta 24756019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 341
Target Start/End: Complemental strand, 24765058 - 24765016
Alignment:
Q  299 tctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    ||||||||||| |||| ||||||||||||||||||||||||||    
T  24765058 tctataacatcacgtatgatgttttcataactatttctgatta 24765016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 8886447 - 8886489
Alignment:
Q  299 tctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    |||||||||||| |||| |||||||||||||||||| ||||||    
T  8886447 tctataacatctggtacaatgttttcataactatttatgatta 8886489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 17972263 - 17972209
Alignment:
Q  287 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  17972263 cctcctcgaggttctataacatctggtacgatgttttcataactatttctgatta 17972209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 30649398 - 30649452
Alignment:
Q  287 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  30649398 cctcctcgaggttctataacatctggtacgatgttttcataactatttctgatta 30649452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 30654097 - 30654151
Alignment:
Q  287 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  30654097 cctcctcgaggttctataacatctggtacgatgttttcataactatttctgatta 30654151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 341
Target Start/End: Complemental strand, 25480414 - 25480372
Alignment:
Q  299 tctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  25480414 tctataacatctggtacgatgttttcataactatttctgatta 25480372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 341
Target Start/End: Complemental strand, 25488020 - 25487978
Alignment:
Q  299 tctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  25488020 tctataacatctggtacgatgttttcataactatttctgatta 25487978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 9182308 - 9182254
Alignment:
Q  287 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    ||||||| ||| |||||||||||| ||| ||| ||||||||||||||||||||||    
T  9182308 cctcctcgaggttctataacatctggtatgatattttcataactatttctgatta 9182254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 341
Target Start/End: Original strand, 30616168 - 30616205
Alignment:
Q  304 aacatctcgtacgatgttttcataactatttctgatta 341  Q
    |||||||| |||||||||||||||||||||||||||||    
T  30616168 aacatctcctacgatgttttcataactatttctgatta 30616205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 10138508 - 10138562
Alignment:
Q  287 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    ||||||||||| |||||||||| | ||||||||||||||||||||||||||||||    
T  10138508 cctcctcaaggttctataacatttggtacgatgttttcataactatttctgatta 10138562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 302 - 341
Target Start/End: Complemental strand, 16750291 - 16750252
Alignment:
Q  302 ataacatctcgtacgatgttttcataactatttctgatta 341  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  16750291 ataacatctagtacgatgttttcataactatttctgatta 16750252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 25853626 - 25853668
Alignment:
Q  299 tctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    ||||||||||||  |||||||||||||||||||||||||||||    
T  25853626 tctataacatctgatacgatgttttcataactatttctgatta 25853668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 47453774 - 47453720
Alignment:
Q  287 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    ||||||| ||| |||||||||||| |||| |||||||||||||||||| ||||||    
T  47453774 cctcctcgaggttctataacatctagtacaatgttttcataactatttttgatta 47453720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 66013 - 66055
Alignment:
Q  299 tctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    ||||||||||| |||| ||||||||||||||||||||||||||    
T  66013 tctataacatcacgtatgatgttttcataactatttctgatta 66055  T

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Target: scaffold0070; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 61811 - 61853
Alignment:
Q  299 tctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    ||||||||||| | || ||||||||||||||||||||||||||    
T  61811 tctataacatcacatatgatgttttcataactatttctgatta 61853  T

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Target: scaffold0045 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 81573 - 81615
Alignment:
Q  299 tctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    ||||||||||||||||| |||||||||||||||||||| ||||    
T  81573 tctataacatctcgtacaatgttttcataactatttctaatta 81615  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 341
Target Start/End: Complemental strand, 12796343 - 12796301
Alignment:
Q  299 tctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    ||||||||||||| ||||||| |||||||||||||||||||||    
T  12796343 tctataacatctcctacgatgctttcataactatttctgatta 12796301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 21667780 - 21667822
Alignment:
Q  299 tctataacatctcgtacgatgttttcataactatttctgatta 341  Q
    ||||||||||||||||| ||||  |||||||||||||||||||    
T  21667780 tctataacatctcgtacaatgtactcataactatttctgatta 21667822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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