View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_71 (Length: 363)
Name: NF8208A_low_71
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_71 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 5 - 348
Target Start/End: Complemental strand, 37471258 - 37470913
Alignment:
| Q |
5 |
tggcaatactggaacttgcctaaaagaacaaatcaaaccacaaaatgcatcttactctttgagtatatgtcatcttcc-aggtggttacaannnnnnnn- |
102 |
Q |
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| T |
37471258 |
tggcaatactggaacttgcctaaaagaacaaatcaaaccacaaaatgcatcttactctttgagtatgtgtcatcttcctaggtgattacaattttttttt |
37471159 |
T |
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| Q |
103 |
ctttgcaaaagcaaaatgaaatgcattactgacatgcacaagatgtgcagaatgcctcacaagcaacctccaaacgagatccaatacgcaaaataaggtg |
202 |
Q |
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| T |
37471158 |
ctttgcaaaagcaaaatgaaatgcattactgacatgcacaagatgtgcagaatgcctcacaagcaacctccaaacgagatccaatacacaaaataaggtg |
37471059 |
T |
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| Q |
203 |
tactacaataaaaccaaacgaaaactaatgtgtaacatcacaatccgatattggcattcttccacaataaaacagaaactactccctcaagaaacagcca |
302 |
Q |
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| T |
37471058 |
tactacaataaaaccaaacgaaaactaatgtgtaacatcacaattcgattttggcattcttccacaataaaacagaaactactccctcaagaaacagcca |
37470959 |
T |
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| Q |
303 |
ctgatatcggcatcaaattggctgcaattatctctccatgatgtcc |
348 |
Q |
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| T |
37470958 |
ctgatatcggcatcaaattggctgcaattatctctccataatgtcc |
37470913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 5168621 - 5168670
Alignment:
| Q |
107 |
gcaaaagcaaaatgaaatgcattactgacatgcacaagatgtgcagaatg |
156 |
Q |
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| T |
5168621 |
gcaaaagcaaaatgaattgtattattgatatgcacaagatgtgcaaaatg |
5168670 |
T |
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