View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_75 (Length: 359)
Name: NF8208A_low_75
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_75 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 6 - 224
Target Start/End: Original strand, 31490834 - 31491053
Alignment:
| Q |
6 |
ttcacaaaagaccaatgttatatatagcgaagaaaaacatagcaaacagaccacggatgaaatacaaccattggtttcttggttgtttgactgaatgcat |
105 |
Q |
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| T |
31490834 |
ttcacaaaagaccaatgctatatatagcgaagaaaaacatagtgagcagaccacgaatgaaatacaaccattggtttattggttgtttgactgaatgcat |
31490933 |
T |
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| Q |
106 |
ggcttgatggaagtaaaagggaccta-tgcaaatgcttgttagctgtcgttgcgatatatatcattttccttcgcaaaaagttcggttcgactagttagg |
204 |
Q |
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| T |
31490934 |
ggattgatggaagtaaaagggacctactgcaaatgcttgttaggtgtcgtcacgatatatatcattttccttcgcaaaaagttcggttcgactagttagg |
31491033 |
T |
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| Q |
205 |
ttcaactaatttcaacctaa |
224 |
Q |
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| T |
31491034 |
ttcaattaatttcaacctaa |
31491053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 223 - 353
Target Start/End: Original strand, 31491082 - 31491212
Alignment:
| Q |
223 |
aaaaagtttactagagactcaattgcccatatcaacattttgatcaacactatggcccaatacttaaaaacaaacaatttaaacaaataagttgatagag |
322 |
Q |
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| T |
31491082 |
aaaaagtttactagagactcaattgcccatatcaacattttgatcaacactatggcccaatacttaaaaacaaacaatttaaacaaataagttgatagag |
31491181 |
T |
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| Q |
323 |
ggacaacacataaattcattgtagtgaaact |
353 |
Q |
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| T |
31491182 |
ggacaacacataaattcattgtagtgaaact |
31491212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 251 - 351
Target Start/End: Original strand, 50445730 - 50445835
Alignment:
| Q |
251 |
atatcaacattttgatcaacactatggcccaatactt-------aaaaacaaacaatttaaacaaataagttgatagagggacaacacataaattcattg |
343 |
Q |
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| T |
50445730 |
atatcaacattttgagcaacaatatggcccaatacttcaaaaataaaaaaacacaatttaaacaaataaattgatagaggga-aacaca-aaattcactg |
50445827 |
T |
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| Q |
344 |
tagtgaaa |
351 |
Q |
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|||||||| |
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| T |
50445828 |
tagtgaaa |
50445835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 52545018 - 52544929
Alignment:
| Q |
12 |
aaagaccaatgttatatatagcgaagaaaaacatagcaaacagaccacggatgaaatacaaccattggtttcttggttgtttgactgaatg |
102 |
Q |
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| T |
52545018 |
aaagaacaatgctatatacagcgaagaaaaacattgcga-cacaccacgaatgaaatacaaccattgaattattggctatttgactgaatg |
52544929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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