View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_76 (Length: 359)
Name: NF8208A_low_76
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_76 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 18 - 359
Target Start/End: Original strand, 5678289 - 5678632
Alignment:
| Q |
18 |
gacatcacttggaatctcctgagaaaaaatcctataattaagcaatacaactcattggtttcagttactaaaatccaacaaaagttagcaaacaagaaca |
117 |
Q |
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| T |
5678289 |
gacatcacttggaatctcctgagaaaaaatcctataattaagcaatacaactcattggtttcagttactaaaatccaacaaaagttagcaaacaagaaca |
5678388 |
T |
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| Q |
118 |
tgcacaagaaaagtgtcaagtacatttgacatatatatacataaacatnnnnnnn--tataccagtcgcttgttcttttcatggcactagatagaagctc |
215 |
Q |
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| T |
5678389 |
tgcacaagaaaagtgtcaagtacatttgacatatatatacataaacataaaaaaaaatataccagtcacttgttcttttcatggcactagatagaagctc |
5678488 |
T |
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| Q |
216 |
ttgcttcttcacaggcaagtcactagcagatgttgtagttttgtctagaccacgatccaccatggcaagtacagaaagatttctacctcactataaatga |
315 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5678489 |
ttgcttcttcacagacaagtcactagcagatgttgtagttttgtctagaccacgatccaccatggcaagtacagaaagatttctacctcactataaatga |
5678588 |
T |
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| Q |
316 |
agcataaaaagattaatgagtcagttatagtataggctcaagga |
359 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5678589 |
agcagaaaaagattaatgagtcagttatagtataggctcaagga |
5678632 |
T |
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