View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_80 (Length: 355)
Name: NF8208A_low_80
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_80 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 6958490 - 6958266
Alignment:
| Q |
1 |
acaattttcaagcagaattcaaacttcaaatagcactaaaaacctacaactattcctaccatattaccatccttataaaacataagccaaaaatcacaat |
100 |
Q |
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| T |
6958490 |
acaattttcaagcagaattcaaacttcaaatgacactaaaaacctataactattcctaccaaagtaccatccttataaaacataagccaaaaatcacaat |
6958391 |
T |
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| Q |
101 |
aacacttatattgatgtaatctagaaaccacaaaccaaacctgcttgaaagagagctaaaggtgttaatcaaatattacaatataatgttacttgaaaat |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6958390 |
aacacttatactgatgtaatctagaaaccacaaaccaaacctgcttgaaagagagctaaaggtgttaatcaaatattgcaatataatgttacttgaaaat |
6958291 |
T |
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| Q |
201 |
gaccatatcatagtaagatagattc |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
6958290 |
gaccatatcatagtaagatagattc |
6958266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 256 - 355
Target Start/End: Complemental strand, 6956893 - 6956794
Alignment:
| Q |
256 |
agaaatatggtgaagatgttttgaaacgattctacacgttacactgcaatccaccagaaataccaatggagatgggaatcaaactcggcaaagatgttga |
355 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6956893 |
agaaatatggtgaagatgttttgaaaagattctacacgttacactgcaatccaccagaaataccaatagagatgggaatcaaactcggcaaagatgttga |
6956794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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