View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_82 (Length: 353)
Name: NF8208A_low_82
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_82 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 20 - 350
Target Start/End: Original strand, 40115961 - 40116291
Alignment:
| Q |
20 |
cagattcatcatcacgttgcagaacattttcatagtccacaagtagatcatgaagctcagcaaaggctatgggattctcacgcgtacgaagggcagcaga |
119 |
Q |
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| T |
40115961 |
cagattcatcttcacgttgcagaacattttcatagtccataagtagatcatgaagctcaacaaaggctatgggattctcacgcgtacgaagggcagcaga |
40116060 |
T |
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| Q |
120 |
aacttctttgtactcagatccaagcccattcagagcatgaataaccaagtcatcatcatcaacaggtttgttaatgacagcaagctcatcagagattgat |
219 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40116061 |
aacttctttgtactcagatccaagcccattgagagcatgaataaccaagtcatcatcatcaacaggtttgttgatgacagcaagctcatcagagattgat |
40116160 |
T |
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| Q |
220 |
ttaataccttgtaggtattcagaaactgatttggagccctttgttgtacaagacaggcgctccttaagatgcataatgcgtgatctagtcttgctagcaa |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40116161 |
ttaataccttgtaggtattcagaaactgatttggagccctttgttgtacgagacaggcgctccttaagatgcataatgcgtgatctagtcttgctagcaa |
40116260 |
T |
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| Q |
320 |
acattttcttgagggtatcccaagcttgttg |
350 |
Q |
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| T |
40116261 |
acattttcttgagggtatcccaagcttgttg |
40116291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 66 - 341
Target Start/End: Complemental strand, 3016628 - 3016353
Alignment:
| Q |
66 |
atcatgaagctcagcaaaggctatgggattctcacgcgtacgaagggcagcagaaacttctttgtactcagatccaagcccattcagagcatgaataacc |
165 |
Q |
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| T |
3016628 |
atcatgaagttcatcaaatgcgatggcattctcccgagttctaagggctgcagcgatctctttgaactcggacccaaggccattgggagcatgaatcacg |
3016529 |
T |
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| Q |
166 |
aagtcatcatcatcaacaggtttgttaatgacagcaagctcatcagagattgatttaataccttgtaggtattcagaaactgatttggagccctttgttg |
265 |
Q |
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| ||||||||||||| ||| ||||| |||| ||||| |||||||| |||| ||| || |||| ||||||||||| || |||||||| || || | | |
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| T |
3016528 |
agatcatcatcatcaataggcttgttgatgattgcaagttcatcagaaattgctttgatggcttggaggtattcagagacggatttggaacctttagagg |
3016429 |
T |
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| Q |
266 |
tacaagacaggcgctccttaagatgcataatgcgtgatctagtcttgctagcaaacattttcttgagggtatccca |
341 |
Q |
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| T |
3016428 |
ttcgagttaaccgctctttaagatgcataatgcgagctcttgttttgcttgcaaacattttgttaaggatatccca |
3016353 |
T |
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