View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_84 (Length: 352)
Name: NF8208A_low_84
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_84 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 330
Target Start/End: Complemental strand, 6605284 - 6604971
Alignment:
| Q |
16 |
gacatcatattttgagtgatttccctttcttgtaagtaaattaactcggacacttatttactcaataggctacttattttcatattaaatattaatggac |
115 |
Q |
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| T |
6605284 |
gacatcatattttgagtgatttccctttcttgtaagtaaattaactcggacacttatttactcaataggctacttattttcatattaaatattaatggac |
6605185 |
T |
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| Q |
116 |
aataaacattgcttatttagtgagatagttggttggtttaattaggctgagatagttataataaataaagtgagaagtatgcaccaggaaggtttttctc |
215 |
Q |
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| T |
6605184 |
aataaacattgcttatttagtgagatagttggttggtttaattaggctgagatagttataataaataaagtgagaagtatgcaccaggaaggtttttctc |
6605085 |
T |
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| Q |
216 |
caggatgctccattcttgctgtaccttttttgcccaatctttcttaacctacaaaggagcaaaggagagggnnnnnnngtatgccaaaatgctttcaata |
315 |
Q |
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| T |
6605084 |
caggatgctccattcttgctgtaccttttttgcccaatctttcttaacctacaaaggagcaaaggagaggg-aaaaaagtatgccaaaatgctttcaata |
6604986 |
T |
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| Q |
316 |
taattatgttactta |
330 |
Q |
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| T |
6604985 |
taattatgttactta |
6604971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 271
Target Start/End: Complemental strand, 35442638 - 35442557
Alignment:
| Q |
190 |
aagtatgcaccaggaaggtttttctccaggatgctccattcttgctgtaccttttttgcccaatctttcttaacctacaaag |
271 |
Q |
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| T |
35442638 |
aagtatgtaccaggaagacttttctcaaggatgctccattcttgctgaacctttttcacccaacctttttttacctataaag |
35442557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 21 - 330
Target Start/End: Original strand, 3698258 - 3698565
Alignment:
| Q |
21 |
catattttgagtgatttccctttcttgtaagtaaattaactcggacacttatttactcaataggctacttattttcatattaaatattaatggacaataa |
120 |
Q |
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| T |
3698258 |
catatttcgagtgatttccctttcttgcaagtaaattaactcggacatttatttactcaataggctacttattttcagattaaatattaattgacaataa |
3698357 |
T |
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| Q |
121 |
acattgcttatttagtgagatagtt-ggttggtttaattaggctgagatagttataataaataaagtgagaagtatgcaccaggaaggtttttctccagg |
219 |
Q |
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| T |
3698358 |
acattgcttatttagtgagatagtttggttggtttaatttgactgagatagttataataa-taaagtgagaagtatgcaccaggaaggtttttctccagg |
3698456 |
T |
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| Q |
220 |
atgctccattcttgctgtaccttttttgcccaatctttcttaacctacaaaggagcaaaggagagggnnnnnnngtatgccaaaatgctttcaatataat |
319 |
Q |
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| T |
3698457 |
atgctccattcttgctgtaccttttttgcccaatctttcttaacctacaaaggagcaaaggagagggaaaaaa--taagccaaaatgctttcaatataat |
3698554 |
T |
|
| Q |
320 |
tatgttactta |
330 |
Q |
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||||||||||| |
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| T |
3698555 |
tatgttactta |
3698565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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