View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_89 (Length: 349)
Name: NF8208A_low_89
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_89 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 27775064 - 27774748
Alignment:
| Q |
18 |
gacataatttatcttttacatttttatcttttgacatgttaaatttagaatacatctttattttccaaccaccaggataactacggctgttgtttatctt |
117 |
Q |
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| T |
27775064 |
gacatcatttatcttttacatttttatcttttgacatgttaaatttagaatacatctttattttccaaccaccaggataactacggctgttgtttatctt |
27774965 |
T |
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| Q |
118 |
ctttgttttcaattatatcaaacagacatgctattgttgttttttactacaaattataacatttgcatctactctaagatatttttccttacattgattt |
217 |
Q |
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| T |
27774964 |
ctttgttttcaattatatcaaacagacatgctattgttgttttttactacaaatgataacatttgcatctactctaagatatttttccttacattgattt |
27774865 |
T |
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| Q |
218 |
ttatattgcagatgctgagggatgactcccttcccgtttgcttacctgagaaagtacatgatgtgaaattgggcgactcagctgaggagagtactgctac |
317 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27774864 |
ttatattgcagatgctgagggatgactcccttcctgtttgcttacctgagaaagtacatgatgtgaaattgggcgactcagctgaggagagtactgctac |
27774765 |
T |
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| Q |
318 |
tcctgcaaccaatgatg |
334 |
Q |
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||||||||||||||||| |
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| T |
27774764 |
tcctgcaaccaatgatg |
27774748 |
T |
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