View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_9 (Length: 492)
Name: NF8208A_low_9
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_9 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 6 - 488
Target Start/End: Original strand, 18339394 - 18339870
Alignment:
| Q |
6 |
aattctaattggtcaataaaaatggatttgaatgcaatttcnnnnnnnnnnnncctaagtttatccttaagcaatctatcatgaaaagtaaaaaggggta |
105 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18339394 |
aattctaattggtcaataaaaatggatttcaatgcaatttcttttttatttttccttagtttatccttaagcaatctatcatgaaaagtaaaaaggggta |
18339493 |
T |
|
| Q |
106 |
aagtaactttgtgttgattgttttcaaaatttaagttttcttcttctgcatgtaaaaaaggaataaataaatcaatcaaattccgggaggcttcataaag |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18339494 |
aagtaactttgtgttgattgttttcaaaatttaagttttcttcttctgcatgtaaaaaaggaataaataaatcaatcaaattccgggaggcttcataaag |
18339593 |
T |
|
| Q |
206 |
tgcttctttaggagttaaacttccatttgtccatatttcgagaaagaatatctctatctcttgtttctcattaccattcacataagaatgaatactatga |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
18339594 |
tgcttctttaggagttaaacttccatttgtccatatttcgagaaagagtatc------tcttgtttctcattaccattcacataagaatgaatactatga |
18339687 |
T |
|
| Q |
306 |
tttgcatttctaacaggcataaatactgcatctatagtataacttccatcttgaatgttgtttagtgtttttatacgatatccacgcttcctctcaattt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18339688 |
tttgcatttctaacaggcataaatactgcatctatagtataacttccatcttgaatgttgtttagtgtttttatacgatatccacgcttcctctcaattt |
18339787 |
T |
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| Q |
406 |
gtaattcaatacacaaattaataggttctgttaggttagctatatgttgtgtattatcaacgatttccaccgaaggtggtaaa |
488 |
Q |
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| T |
18339788 |
gtaattcaatacacaaattaataggttctgttaggttagctatatgttgtgtattatcaacgatttccaccgaaggtggtaaa |
18339870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 260 - 442
Target Start/End: Original strand, 22101397 - 22101579
Alignment:
| Q |
260 |
tatctcttgtttctcattaccattcacataagaatgaatactatgatttgcatttctaacaggcataaatactgcatctatagtataacttccatcttga |
359 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| | |
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| T |
22101397 |
tatctcttgtttctcattaccattcacataagaatgaatactatgatttgcatttctaaccggcatagatactgcatctatagtataacttccatcttaa |
22101496 |
T |
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| Q |
360 |
atgttgtttagtgtttttatacgatatccacgcttcctctcaatttgtaattcaatacacaaattaataggttctgttaggtt |
442 |
Q |
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| T |
22101497 |
atgttgtttagtgtttttatatgatatccacgcttcctctcaatttgtaattcaatacaaaaattaataggttctgttaggtt |
22101579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 392 - 480
Target Start/End: Complemental strand, 29443750 - 29443662
Alignment:
| Q |
392 |
cttcctctcaatttgtaattcaatacacaaattaataggttctgttaggttagctatatgttgtgtattatcaacgatttccaccgaag |
480 |
Q |
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| T |
29443750 |
cttcctctcaatttgtaattcaatacacaaattaataggttctgttaggttagctatatgttgtgtattatcaacgatttccaccgaag |
29443662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 352 - 427
Target Start/End: Original strand, 39776070 - 39776145
Alignment:
| Q |
352 |
catcttgaatgttgtttagtgtttttatacgatatccacgcttcctctcaatttgtaattcaatacacaaattaat |
427 |
Q |
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| T |
39776070 |
catcttgaatgttgtttagtgtttttatacgatatccacgcttcctctcaatttgtaattcaatacacaaattaat |
39776145 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 277 - 488
Target Start/End: Original strand, 31379212 - 31379424
Alignment:
| Q |
277 |
taccattcacataagaatgaatactatgatttgcatttctaacaggcataaatact-gcatctatagtataacttccatcttgaatgttgtttagtgttt |
375 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31379212 |
taccattcacataagaatgaatactatgatttgcatttccaagaggcataaatacttgcatctatagtataacttccatcttgaatgttgtttagtgttt |
31379311 |
T |
|
| Q |
376 |
ttatacgatatccacgcttcctctcaatttgtaattcaatacacaaattaataggttctgttaggttagctatatgttgtgtattatcaacgatttccac |
475 |
Q |
| |
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||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
31379312 |
ttatatgatatccatgcttcctatcaatttgtaattcaatacacaaattaataggttctgttaggttaactatatgttgtgtattatcaacaatttccac |
31379411 |
T |
|
| Q |
476 |
cgaaggtggtaaa |
488 |
Q |
| |
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||||||||||||| |
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| T |
31379412 |
cgaaggtggtaaa |
31379424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 373 - 438
Target Start/End: Complemental strand, 327187 - 327122
Alignment:
| Q |
373 |
tttttatacgatatccacgcttcctctcaatttgtaattcaatacacaaattaataggttctgtta |
438 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
327187 |
tttttatacgatatccatcattcctctcaatttgtaattcaatacacaaattaacagcttctgtta |
327122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 156 - 359
Target Start/End: Original strand, 274868 - 275065
Alignment:
| Q |
156 |
tgtaaaaaaggaataaataaatcaatcaaattccgggaggcttcataaagtgcttctttaggagttaaacttccatttgtccatatttcgagaaagaata |
255 |
Q |
| |
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|||| |||||||| |||||||||||||||||| || || || |||||||| ||||| ||||| |||||||||||||| ||||||||||| ||||| | |
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| T |
274868 |
tgtagaaaaggaagaaataaatcaatcaaattacgagaagcctcataaagcgcttccttaggggttaaacttccattagtccatatttctagaaaaa--- |
274964 |
T |
|
| Q |
256 |
tctctatctcttgtttctcattaccattcacataagaatgaatactatgatttgcatttctaacaggcataaatactgcatctatagtataacttccatc |
355 |
Q |
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|||||| ||||| ||||| |||||| || ||||| |||||||| ||| |||||| ||||||||| |||| |||||||||| |||||||||||| |
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| T |
274965 |
---gtatctcgtgtttttcatttccattcccacaagaaaaaatactataattcacatttcgaacaggcatggatacagcatctataggataacttccatc |
275061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 349 - 488
Target Start/End: Original strand, 38592692 - 38592833
Alignment:
| Q |
349 |
ttccatcttgaatgttgtttagtgtttttatacgatatccacgcttcctctcaatttgtaat--tcaatacacaaattaataggttctgttaggttagct |
446 |
Q |
| |
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|||||||||||||||||||| ||||||||||||| || | ||||||| |||||||||||| |||||||| |||||||||||||||| |||||||||| |
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| T |
38592692 |
ttccatcttgaatgttgttttgtgtttttatacgccattctagcttcctttcaatttgtaatattcaatacataaattaataggttctgataggttagct |
38592791 |
T |
|
| Q |
447 |
atatgttgtgtattatcaacgatttccaccgaaggtggtaaa |
488 |
Q |
| |
|
||| || | ||||||||||||||| ||| ||||||||||| |
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| T |
38592792 |
ttattttttatattatcaacgattttcacataaggtggtaaa |
38592833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 349 - 488
Target Start/End: Original strand, 38596288 - 38596429
Alignment:
| Q |
349 |
ttccatcttgaatgttgtttagtgtttttatacgatatccacgcttcctctcaatttgtaat--tcaatacacaaattaataggttctgttaggttagct |
446 |
Q |
| |
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|||||||||||||||||||| ||||||||||||| || | ||||||| |||||||||||| |||||||| |||||||||||||||| |||||||||| |
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| T |
38596288 |
ttccatcttgaatgttgttttgtgtttttatacgccattctagcttcctttcaatttgtaatattcaatacataaattaataggttctgataggttagct |
38596387 |
T |
|
| Q |
447 |
atatgttgtgtattatcaacgatttccaccgaaggtggtaaa |
488 |
Q |
| |
|
||| || | ||||||||||||||| ||| ||||||||||| |
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|
| T |
38596388 |
ttattttttatattatcaacgattttcacataaggtggtaaa |
38596429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 400 - 476
Target Start/End: Complemental strand, 8965071 - 8964995
Alignment:
| Q |
400 |
caatttgtaattcaatacacaaattaataggttctgttaggttagctatatgttgtgtattatcaacgatttccacc |
476 |
Q |
| |
|
|||||| || ||||||||||||||||| ||||||| | |||||||||||||||||||||| |||||||||||||||| |
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| T |
8965071 |
caatttatatttcaatacacaaattaacaggttctataaggttagctatatgttgtgtatcatcaacgatttccacc |
8964995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 448
Target Start/End: Original strand, 38557698 - 38557815
Alignment:
| Q |
334 |
catctatagtataacttccatcttgaatgttgttta--gtgtttttatacgatatccacgcttcctctcaatttgta--attcaatacacaaattaatag |
429 |
Q |
| |
|
|||||||||| ||| ||||||||||||| ||||||| || ||||||||||| |||| |||||| || ||||||| ||||||| || ||||| |||| |
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| T |
38557698 |
catctatagtgtaatttccatcttgaatattgtttagggtttttttatacgacatcccaacttcctttctatttgtaatattcaattca-aaatttatag |
38557796 |
T |
|
| Q |
430 |
gttctgttaggttagctat |
448 |
Q |
| |
|
||| ||||||||||||||| |
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| T |
38557797 |
gttatgttaggttagctat |
38557815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 373 - 438
Target Start/End: Original strand, 42315365 - 42315430
Alignment:
| Q |
373 |
tttttatacgatatccacgcttcctctcaatttgtaattcaatacacaaattaataggttctgtta |
438 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
42315365 |
tttttatacgatatccatcattcctctcaatttgtaattcaatacacaaattaacagcttctgtta |
42315430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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