View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_92 (Length: 346)
Name: NF8208A_low_92
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_92 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 15 - 267
Target Start/End: Complemental strand, 13669681 - 13669429
Alignment:
| Q |
15 |
caatatcattgttaacagcagcaagcaatggaatagctgtcaatcttctcactgacttgaacttgaaaacatcaatcattgatttccattgcatcatgtt |
114 |
Q |
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| T |
13669681 |
caatatcattgttaacagcagcaagcaatggaatagctgttaatcttctcactgacttgaacttgaaaacatcaatcattgatttccattgcatcatgtt |
13669582 |
T |
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| Q |
115 |
actttccttccaacctaattttccctccaccggtggtgaattctccgatgagtacgaggagaaactgctgcttccactattgtctgactctgttcctgaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13669581 |
actttccttccaacctaattttccctccaccggtggtgaattctccgatgagtacgaggagaaactgctgcttccactattgtctgactctgttcctgaa |
13669482 |
T |
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| Q |
215 |
acaggggcatctagtattgctcttggtgatgcttcatcgtcgcttgaaaactg |
267 |
Q |
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| T |
13669481 |
acaggggcatctagtattgctcttggtgatgcttcatcgtcgcttgaaaactg |
13669429 |
T |
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