View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_95 (Length: 344)
Name: NF8208A_low_95
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_95 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 2 - 343
Target Start/End: Complemental strand, 40636697 - 40636356
Alignment:
| Q |
2 |
gaaatgcatgcattaaagctaaatctctttgggtgcacttcaaattcttgtccatagacctccacaacttcacaatccagacaataacatcacgaagtgg |
101 |
Q |
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| T |
40636697 |
gaaatgcatgcattaaagctaaatctctttgggtgcacttcaaattattgtccatagacctccacaacttcacaatccagacaataacatcacgaagtgg |
40636598 |
T |
|
| Q |
102 |
aaaatacaattggaatatgagtactacctgaagagggagatacagggacagtatgagaaccggtaaattaatacaagtgtaatagatgatgctccggatc |
201 |
Q |
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| T |
40636597 |
aaaatacaattggaatatgagtactacctgaagagggagatacagggacagtatgagaaccggtaaattaatataagtgtaatagatgatgctccggatc |
40636498 |
T |
|
| Q |
202 |
agccttcttagtattgctattccttttctccccgtcttctcattggtcttctccagtttacgccttgttttggtaatgttatactctcttgctccttgtt |
301 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40636497 |
agccttcttagtattgctcttccttttctccccgtcttctcattggtcttctccagtttacgccttgttttggtaatgttacactctcttgctccttgtt |
40636398 |
T |
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| Q |
302 |
ctgcaataacttcgaaaatttgagagagcaatacatacaaga |
343 |
Q |
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| T |
40636397 |
ctgcaacaacttcgaaagtttgagagagaaatacatacaaga |
40636356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 40628464 - 40628543
Alignment:
| Q |
10 |
tgcattaaagctaaatctctttgggtgcacttcaaattcttgtccatagacctccacaacttcacaatccagacaataac |
89 |
Q |
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||||||| | ||||||||||||| |||| |||||| || ||||| ||||| |||||||||||||||||||||||||| |
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| T |
40628464 |
tgcattagatctaaatctctttgcaaacactgcaaattattatccatggacctgcacaacttcacaatccagacaataac |
40628543 |
T |
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