View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_96 (Length: 344)
Name: NF8208A_low_96
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_96 |
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Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 6 - 335
Target Start/End: Complemental strand, 2819717 - 2819388
Alignment:
| Q |
6 |
atcatagaaatttggtttccctttatcaccttgaagtgtgatctcaactaatgtagctggaggtgttccaatgagtccattgcaagctaatcttccatca |
105 |
Q |
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| T |
2819717 |
atcatagaaatttggtctccctttatcaccttgaagtgtgatttcaactaatgtagctggaggtgttccaatgagtccattgcaagctaatcttccatca |
2819618 |
T |
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| Q |
106 |
caatccccagtttcacaagatggtttccaattatttgaagcaaaattgcaacctgttctagcccaaattctaccactccatgaccatggtgctagaattt |
205 |
Q |
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| T |
2819617 |
caatccccagtttcacaagatggtttccaattatttgaagcaaaattgcaacctgttctagcccaaattctaccactccatgaccatggtgctagaattt |
2819518 |
T |
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| Q |
206 |
tctttgtttggcctgaaggaaggtagaatccaccatctgctataattggttgaccagtgtttggtgctgttgctggccatattggaaagggacatttatt |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2819517 |
tctttgtttggcctgaaggaaggtagaatccaccatctgctataattggttgaccagtgtttggtgctgttgcaggccatattggaaagggacatttatt |
2819418 |
T |
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| Q |
306 |
gtgtatatagaatgttgcttgatgtccatc |
335 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
2819417 |
gtgtatatagaatgttgcttgatgtccatc |
2819388 |
T |
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