View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_1D_high_12 (Length: 397)
Name: NF8208_1D_high_12
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_1D_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 15 - 374
Target Start/End: Complemental strand, 11886399 - 11886040
Alignment:
| Q |
15 |
actgcacctcctgatagtgctgatagtgagagagaattccgcattatgtgcaaaggaactagttcagaggggtcatagttatattttcataagaggggac |
114 |
Q |
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| T |
11886399 |
actgcacctcctgatagtgctgatagtgagagagaattccgcattatgtgcaaaggaactagttcagagggttcatagttatattttcataagagggtac |
11886300 |
T |
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| Q |
115 |
attcaattattttaatggacacaaagcatgcataagcatttttacgctacaaacatatacatagacattgttttaagctacaaacaaatacacatttctt |
214 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11886299 |
attcaattattttagtggacacaaagcatgcataagcatttttacgctacaaacatatacatagacattgttttaagctacaaacaaatacacatttctt |
11886200 |
T |
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| Q |
215 |
caatttcttttccctattataagtatacttcgattttttgactatcacattcgtttccttcactataatggacaaatagcttttcactcannnnnnnaat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11886199 |
caatttcttttccctattataagtatacttcgattttttgactatcacattcgtttccttcactataatggacaaatagcttttcactcatttttttaat |
11886100 |
T |
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| Q |
315 |
cgaaggaatatatatactttaaattacaggtgtggtggatgatagtctccgtcactataa |
374 |
Q |
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| T |
11886099 |
caaaggaatatatatactttaaattacaggtgtggtggatgatagtctccgtcagtataa |
11886040 |
T |
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