View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_1D_high_20 (Length: 325)
Name: NF8208_1D_high_20
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_1D_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 128 - 309
Target Start/End: Complemental strand, 1825065 - 1824889
Alignment:
| Q |
128 |
ttattctaatttactttcacatgatggtgaaaaatatgtctgtttgatcaaaaaaggtgattctccaccacttgtatttttgcataattcagtgtaacaa |
227 |
Q |
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| T |
1825065 |
ttattctaatttactttcacaagatggtgaaaaatgtgact-----atcaaaaaaggtgattctccaccacttgtatttttgcataattcagtgttacaa |
1824971 |
T |
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| Q |
228 |
agtgatgataattcagtgtgaatacagcttgtctaggtcagtttttccctctactctatgggtctcatagtcatagatgtcc |
309 |
Q |
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| T |
1824970 |
agtgatgataattcagtgtgaatacaacttgtctaggtcagtctttccctctgctctatgggtctcatagttatagatgtcc |
1824889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 210
Target Start/End: Complemental strand, 1842306 - 1842192
Alignment:
| Q |
94 |
tggtccaaaaacacgtgctaaaacatnnnnnnnnttattctaatttactttcacatgatggtgaaaaatatgtctgtttgatcaaaaaaggtgattctcc |
193 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||||| ||| |||||||||| | ||| ||||||||| ||||| |||||||||| |
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| T |
1842306 |
tggtccaaaaacacgtgctaaaacataaatagt-ttaatctaatttacttttacaacatggtgaaaa-tgtgtttgtttgatccaaaaaagtgattctcc |
1842209 |
T |
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| Q |
194 |
accacttgtatttttgc |
210 |
Q |
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| T |
1842208 |
accacttgtatttttgc |
1842192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 1825501 - 1825461
Alignment:
| Q |
28 |
aaaagaaaattatatttttggaggctcaaggcaaatttata |
68 |
Q |
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| T |
1825501 |
aaaaaaaaattatatttttggaggctcaaagcaaatttata |
1825461 |
T |
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