View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8208_1D_high_21 (Length: 313)
Name: NF8208_1D_high_21
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_1D_high_21 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 26 - 284
Target Start/End: Complemental strand, 34957867 - 34957609
Alignment:
| Q |
26 |
caaactagcgtgattgcatgtacagagaacacactaatgtaatatggtttggtgacacacaatctttaagcatttgatttgaccgtgccattcataagca |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34957867 |
caaactagcgtgattgcatgtacagagaacacactaatgtaatatggtttggtgacacgcaatctttaagcatttgatttgaccgtgccattcataagca |
34957768 |
T |
|
| Q |
126 |
cgaacgtgcgcatgaaattaggcattatttccccagaattatagtaagttatcacacggccgtgccaaaataccgcacggtcttgcgtctgttcagacca |
225 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
34957767 |
cgaccgtgcgcatgaaattaggcattatttccccagaattacagtaagttatcgcacggccgtgccaaaataccgcacggtcgtgcgtctgtccagacca |
34957668 |
T |
|
| Q |
226 |
atatttcttcctgagctaccactgaggagtatactgagttgtatcataatgtattaaaa |
284 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34957667 |
atatttcttcctgagctaccactgagaagtatactgagttgtatcataatgtattaaaa |
34957609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 50131792 - 50131874
Alignment:
| Q |
24 |
accaaactagcgtgattgcatgtacagagaacac--actaatgtaatatggtttggtgacacacaatctttaagcatttgatt |
104 |
Q |
| |
|
||||||| ||| ||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50131792 |
accaaaccagcatgattacatgcacagagaacactgactaatgtaatatggtttggtgacacacaatctttaagcatttgatt |
50131874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University