View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208_1D_high_22 (Length: 298)

Name: NF8208_1D_high_22
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208_1D_high_22
NF8208_1D_high_22
[»] chr5 (1 HSPs)
chr5 (22-298)||(11365253-11365530)


Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 22 - 298
Target Start/End: Complemental strand, 11365530 - 11365253
Alignment:
Q  22 cattcaattattcatttcatctgaaatctaaattgtattctaatttctaaatttaacttaccattaaagctcgtaaagctatcatcttcataagcatgca 121  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11365530 cattcaattattcatttcatccgaaatctaaattgtattctaatttctaaatttaacttaccattaaagctcataaagctatcatcttcataagcatgca 11365431  T
Q  122 atagcctctctccaatatccccctattagattagaga-aagccttagaaataaattgaatgcaacatcaatatataaataatgggctccctaaatcacgg 220  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11365430 atagcctctctccaatatccccctattagattagagagaagccttagaaataaattgaatgcaacatcaatatataaataatgggctccctaaatcacgg 11365331  T
Q  221 tggaaaatatagaatatgtagctagagtcttgagacgtttcacaagaccgaaagtgacataccatagtttcaaaattt 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11365330 tggaaaatatagaatatgtagctagagtcttgagacgtttcacaagaccgaaagtgacataccatagtttcaaaattt 11365253  T

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