View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208_1D_high_24 (Length: 284)

Name: NF8208_1D_high_24
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208_1D_high_24
NF8208_1D_high_24
[»] chr2 (1 HSPs)
chr2 (6-284)||(44671086-44671364)


Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 6 - 284
Target Start/End: Complemental strand, 44671364 - 44671086
Alignment:
Q  6 atgagatggacatcacgaaccaagatcaagatgacaacaaaagccacacttgaaagggtggcaattgaagataaactagagaagcaacagccattgcctt 105  Q
    |||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44671364 atgacatgaacaacacgaaccaagatcaagatgacaacaaaagccacacttgaaagggtggcaattgaagataaactagagaagcaacagccattgcctt 44671265  T
Q  106 tttccatcgaagatagtttcaagattttcaattgcagctacacatcagttgaaacccttccttcctaatgcgaccaactccagcagcgttttactgctag 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44671264 tttccatcgaagatagtttcaagattttcaattgcagctacacatcagttgaaacccttccttcctaatgcgaccaactccagcagcgttttactgctag 44671165  T
Q  206 cttttccttttcaggaccaacaacacacctctctcactgcacaaacaaacaatattataagtctataacaaatgaggat 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44671164 cttttccttttcaggaccaacaacacacctctctcactgcacaaacaaacaatattataagtctataacaaatgaggat 44671086  T

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