View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8208_1D_high_29 (Length: 251)
Name: NF8208_1D_high_29
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_1D_high_29 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 41729427 - 41729196
Alignment:
| Q |
20 |
atcaggaatttcaccagaaagggaattatttgcaagattcaaaccagcaagctgagtcaaattagaaagggaaagcggaatagtaccgttgaatttgtta |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41729427 |
atcaggaatttcaccagaaagggaattatttgcaaggttcaaaccagcaagctgagtcaaattagaaagcgaaagcggaatagtaccgttgaatttgtta |
41729328 |
T |
|
| Q |
120 |
ttagacaaattaacaacagtaagattcttccaaactgagaaatcaggcaaaggcccagataaattattggactgaagataaagaaaagacaagtttttta |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41729327 |
ttagacaaattaacaacagtaagattcttccaaactgagaaatcaggcaaaggcccagataaattattggactgaagataaagaaaagacaagtttttta |
41729228 |
T |
|
| Q |
220 |
gattggaaaaatcacttggaaaaaacccagat |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
41729227 |
gattggaaaaatcacttggaaaaaacccagat |
41729196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University