View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_1D_low_10 (Length: 441)
Name: NF8208_1D_low_10
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_1D_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 198 - 421
Target Start/End: Original strand, 5055049 - 5055272
Alignment:
| Q |
198 |
cttgtttgattcatgtgtacaaaatatgatttacaatgggtatttacagacttagaatacctaagcaacctaaattaacactgtttgccatatttttggt |
297 |
Q |
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| T |
5055049 |
cttgtttgattgatgtgtacaaaatatgatttacaatgggtatttacagacttagaatacctaagcaacctacattaacactgtttgccatatttttggt |
5055148 |
T |
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| Q |
298 |
ccattaactatcatattatatcatgtaatatcaagactaacattactacggttggtaattactctgtaggctgagctatacatcccaaaattatctctac |
397 |
Q |
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| T |
5055149 |
ccattaactatcatattacatcatgtaatatcaagactaacatgactacggttggtaattactctgtaggctgagctatacatcccaaaattatctctac |
5055248 |
T |
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| Q |
398 |
cactatgttatttactttggaatt |
421 |
Q |
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| T |
5055249 |
cactatgttatttactttggaatt |
5055272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 2 - 149
Target Start/End: Original strand, 5054853 - 5055000
Alignment:
| Q |
2 |
atgaaggccaacttgcacgtgtgacaatgattctctttttattcaagtgattacacccacaaaagatcatgtttctcgtctacgggttcttagactacac |
101 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
5054853 |
atgatggccaacttgcacgtgtgacaatgattccctttttatttaagtgattgcacccacaaaagatcatgtttctcatctgcgggttcttagactacac |
5054952 |
T |
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| Q |
102 |
caaagaacacccattgttgaaggatgaactactatctaagaagacatg |
149 |
Q |
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| T |
5054953 |
caaagaacacccagtgttgaaggatgaactactatctaagaagacatg |
5055000 |
T |
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