View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_1D_low_11 (Length: 415)
Name: NF8208_1D_low_11
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_1D_low_11 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 21 - 415
Target Start/End: Original strand, 40635083 - 40635489
Alignment:
| Q |
21 |
atactcgtataattttatttttgtcatcttctacgagacaagagaaagtacttaactttgatattttggactatgttgatattaataattaggaggacat |
120 |
Q |
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| T |
40635083 |
atactcgtataattttatttttgtcatcttctacgagacaagagaaagtactttactttgat-ttttggactatgttgatattaataattaggaggacat |
40635181 |
T |
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| Q |
121 |
acacgttttgtcctcttcttcctaacttcttcatattccaaagtatttccttatggtttattatcatacaaaaaagtgtgtgcaaataaaattcaaaaag |
220 |
Q |
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| T |
40635182 |
acacgttttgtcctcttcttcctaacttcttcatattccaaagtatttccttatggtt-attatcatacaaaaaagtgtgtgcaaataaaattcaaaaag |
40635280 |
T |
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| Q |
221 |
gagggttggaagcatgaagagtagttccttaatcatttggaaaaccaaaaccaaaagataaacaaattaattaagcagag--------------ttcaca |
306 |
Q |
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| T |
40635281 |
gagggttggaagcatgaagagtagttccttaatcatttggaaaacgaaaaccaaaagataaacaaattaattaagcagagctagcagagaagacttcaca |
40635380 |
T |
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| Q |
307 |
tggctgctggcgttgcagtcgatgttgtggtatcagtggttgcaaaattcctggttgaagagtatgcagttttgggggctacagcgaggcacgtagagtg |
406 |
Q |
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| T |
40635381 |
tggctgctggcgttgcagtcgatgttgtggtatcagtggttgcaaaattcctggttgaagagtatgcagttttgggggctacagcgaggcacgtagaatg |
40635480 |
T |
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| Q |
407 |
gattgagaa |
415 |
Q |
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| T |
40635481 |
gattgagaa |
40635489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 333 - 415
Target Start/End: Complemental strand, 40629728 - 40629646
Alignment:
| Q |
333 |
gtggtatcagtggttgcaaaattcctggttgaagagtatgcagttttgggggctacagcgaggcacgtagagtggattgagaa |
415 |
Q |
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| T |
40629728 |
gtggtatcaggggttgctaaaatcctgattgaagagtatgcggtgttgggggatgcagcgagacacgtagaatggattgagaa |
40629646 |
T |
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