View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_1D_low_12 (Length: 410)
Name: NF8208_1D_low_12
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_1D_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 388
Target Start/End: Original strand, 1831485 - 1831845
Alignment:
| Q |
20 |
aaaaatttatcaaatgcaaagttgaatatggtttatgtgtgtgtgcgtgtgaagaataaaaaaggtaatgatatgatatttatatgtctatatgttaatg |
119 |
Q |
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| T |
1831485 |
aaaaatttatcaaatgcaaagctgaatatggt--------gtgtgtgtgtaaagaataaaaaaggtaatgatctgatacttatctgtctatatgttaatg |
1831576 |
T |
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| Q |
120 |
acttagtggtaactggaagcaacatagcatagatagaaaaatttcaaaagacaaatgatgagagaatttgagatggaagatttgggaaagttaaaatatt |
219 |
Q |
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| T |
1831577 |
acttagtgttaactggaagcaacataacatagacagaaaaatt-caaaagacaaatgatgacagaatttgagatgactgatttgggaaagttaacatatt |
1831675 |
T |
|
| Q |
220 |
tccttgggatggaattcactaaaacttcataatgtttagtggtgcaccagaagaaatatgctacaaatattttaaagagattcaacatgatgggcttcaa |
319 |
Q |
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| T |
1831676 |
tccctggaatggaattcactaaaacttcagaatgtttagtgatgcaccagaagaaatatgctacaaatattttaaagagattcaacatgatgggcttcaa |
1831775 |
T |
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| Q |
320 |
tcctgcatctacaccatctgaagtg-accttaggtgtgtaaagaatgaagataaggagctagttgaccct |
388 |
Q |
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| T |
1831776 |
tcctgcatctacaccatctgaagtgaatcttaagcttgtaaagaatgaagatgaagagctagttgaccct |
1831845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 67 - 334
Target Start/End: Complemental strand, 15490686 - 15490418
Alignment:
| Q |
67 |
tgtgaagaataaaaaaggtaatgatatgatatttatatgtctatatgttaatgacttagtggtaactggaagcaacatagcatagatagaaaaatttcaa |
166 |
Q |
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| T |
15490686 |
tgtgaagaataacaaaggtagaaatctgatgcttatttgtctatatgttgatgatttcgtggtaactggaaccaatataattgagaaagaagaa-ttcat |
15490588 |
T |
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| Q |
167 |
aagacaaatgatgagagaatttgagatggaagatttgggaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtggtgcac |
266 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||| ||| ||||||| |||||||||| | |||||| | || |||||| | |||| |
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| T |
15490587 |
aagacaaatgatgagagaatttgatatggctgatttgggaaagttaatatacttccttgaaatggaattcaattaaactttaaaaggtttagggatgcat |
15490488 |
T |
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| Q |
267 |
cagaag--aaatatgctacaaatattttaaagagattcaacatgatgggcttcaatcctgcatctacacc |
334 |
Q |
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| T |
15490487 |
cagaagataaacatgttattgatattcttaagagattcaacatgatgagttgcaatcctacatatacacc |
15490418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 106 - 276
Target Start/End: Complemental strand, 16944280 - 16944109
Alignment:
| Q |
106 |
tctatatgttaatgacttagtggtaactggaagcaacatagcatagatagaaaa-atttcaaaagacaaatgatgagagaatttgagatggaagatttgg |
204 |
Q |
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| T |
16944280 |
tctatatgttgataatttagtggtaactagaagcaatttagcttagatatacaagaattcaaaagacaaatgatgaaagaattggacatgacttatttgg |
16944181 |
T |
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| Q |
205 |
gaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtggtgcaccagaagaaat |
276 |
Q |
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| T |
16944180 |
gaaagttaccatacttccttggaatagaattcactgaaacctcaaagggattagtgatgcaccagaagaaat |
16944109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 106 - 276
Target Start/End: Complemental strand, 17014945 - 17014774
Alignment:
| Q |
106 |
tctatatgttaatgacttagtggtaactggaagcaacatagcatagatagaaaa-atttcaaaagacaaatgatgagagaatttgagatggaagatttgg |
204 |
Q |
| |
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| T |
17014945 |
tctatatgttgataatttagtggtaactagaagcaatttagcttagatatacaagaattcaaaagacaaatgatgaaagaattggacatgacttatttgg |
17014846 |
T |
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| Q |
205 |
gaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtggtgcaccagaagaaat |
276 |
Q |
| |
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| T |
17014845 |
gaaagttaccatacttccttggaatagaattcactgaaacctcaaagggattagtgatgcaccagaagaaat |
17014774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 162 - 304
Target Start/End: Original strand, 9816931 - 9817073
Alignment:
| Q |
162 |
ttcaaaagacaaatgatgagagaatttgagatggaagatttgggaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtgg |
261 |
Q |
| |
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||||||||||||||||||| ||| ||||| ||| | |||||||| ||||| ||||||| |||| || |||||||||||||| ||| | | |||||| |
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| T |
9816931 |
ttcaaaagacaaatgatgaaagagtttgacatgactggtttgggaaggttaacatatttctttggaatagaattcactaaaacctcaaagggattagtga |
9817030 |
T |
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| Q |
262 |
tgcaccagaagaaatatgctacaaatattttaaagagattcaa |
304 |
Q |
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| T |
9817031 |
tgcactagaagaaatatgcaatagatattttgaagagattcaa |
9817073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 204 - 333
Target Start/End: Original strand, 30065210 - 30065339
Alignment:
| Q |
204 |
ggaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtggtgcaccagaagaaatatgctacaaatattttaaagagattca |
303 |
Q |
| |
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|||||||||| ||| |||||||| |||||||||||||||||||| || || |||| ||| |||||||| |||||| | ||||| | ||||| |||| |
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| T |
30065210 |
ggaaagttaacatacttccttggtatggaattcactaaaacttctgaaggtctagttaagcatcagaagaagtatgcttctgatattctcaagaggttca |
30065309 |
T |
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| Q |
304 |
acatgatgggcttcaatcctgcatctacac |
333 |
Q |
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| T |
30065310 |
acatgttgaactgcaatcctgcatctacac |
30065339 |
T |
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