View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_1D_low_13 (Length: 406)
Name: NF8208_1D_low_13
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_1D_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 2 - 401
Target Start/End: Complemental strand, 40637600 - 40637201
Alignment:
| Q |
2 |
caacaatccatgtaatgcagtgacttttctcatctgacagtaactgagccatcagaacttgtgcgtcgtcatcaaatccaacgacatttgattctttagc |
101 |
Q |
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| T |
40637600 |
caacaatccatgtaatgcagtgacttttctcatctgacagtaactgagccatcagaacttgtgcgtcgtcatcaaatccaacgacatttgattctttagc |
40637501 |
T |
|
| Q |
102 |
aacgagagacaattgcgccgttccgcgaagtatatgaactgtggaggacattgacgactcaattgtcttgcccaaaccatatgcccttcttcttctggag |
201 |
Q |
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| T |
40637500 |
aacgagagacaattgcgccgttccgcgaagtatatgaactgtggaggacattgacgactcaattgtcttgcccaaaccatatgcccttcttcttctggag |
40637401 |
T |
|
| Q |
202 |
gcatcttcaattttgtttctgatagcattgatctcttcgctaataacatgtcgggtccaaaacttgagagtgtataacagaattgacttatacttcaatt |
301 |
Q |
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| T |
40637400 |
gcatcttcaattttgtttctgatagcattgatctcttcgctaataacatgtcgggtccaaaacttgagagtgtataacagaattgacttatacttcaatt |
40637301 |
T |
|
| Q |
302 |
tagcatcataacgttgaatgacagattcaatttcattgacaataccatgcatttgctccacccaaattgtagatcttctatccaggtctctcatttctag |
401 |
Q |
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| T |
40637300 |
tagcatcataacgttgaatgacagattcaatttcattgacaataccatgcatttgctccacccaaattgtagatcttctatccaggtctctcatttctag |
40637201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 2 - 383
Target Start/End: Original strand, 40627682 - 40628060
Alignment:
| Q |
2 |
caacaatccatgtaatgcagtgacttttctcatctgacagtaactgagccatcagaacttgtgcgtcgtcatcaaatccaacgacatttgattctttagc |
101 |
Q |
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| T |
40627682 |
caacaatccaagtaatgcagcgacgtctctcatctgacagtaactgagccatcagaacttgtgcatcatcatcaaatccaacaacatcggattccttagc |
40627781 |
T |
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| Q |
102 |
aacgagagacaattgcgccgttccgcgaagtatatgaactgtggaggacattgacgactcaattgtcttgcccaaaccatatgcccttcttcttctggag |
201 |
Q |
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| T |
40627782 |
aacgagagacaattgtgtggttccgcgtagtatgtgaacggtggacga---tgaggactctattgacttgcccaaaccatatgcccttcttcttctggaa |
40627878 |
T |
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| Q |
202 |
gcatcttcaattttgtttctgatagcattgatctcttcgctaataacatgtcgggtccaaaacttgagagtgtataacagaattgacttatacttcaatt |
301 |
Q |
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| T |
40627879 |
gcatcttcaattttgtttctaatagcattgatcttgttactaataacatgtcgggtccagtacttgaaggtgtaaacgagaatcgacctatgcttcaatt |
40627978 |
T |
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| Q |
302 |
tagcatcataacgttgaatgacagattcaatttcattgacaataccatgcatttgctccacccaaattgtagatcttctatc |
383 |
Q |
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| T |
40627979 |
tggtatcatagtcgcgaatgacagatgcaatttcatcggcaataccttgcatttggtccacccagattctagatcttctatc |
40628060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 40658422 - 40658361
Alignment:
| Q |
2 |
caacaatccatgtaatgcagtgacttttctcatctgacagtaactgagccatcagaacttgt |
63 |
Q |
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|||||||||| ||||||||| ||| |||||| ||||||||||||| |||||||||| ||||| |
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| T |
40658422 |
caacaatccaagtaatgcagcgacgtttctcgtctgacagtaactcagccatcagagcttgt |
40658361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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