View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_1D_low_21 (Length: 361)
Name: NF8208_1D_low_21
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_1D_low_21 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 16 - 361
Target Start/End: Complemental strand, 11365968 - 11365623
Alignment:
| Q |
16 |
ggacatcaacaacacaactataaaggttaacccaaccattatattgattaaatgatcaatagtgtgtaccttatctagaaaattagtgactggatgaatg |
115 |
Q |
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| T |
11365968 |
ggacttcaacaacacaactataaaggttaacccaaccattatattgattaaatgatcaatagtgtgtaccttatctagaaaattagtgactagatgaatg |
11365869 |
T |
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| Q |
116 |
ggaaagtgatgaaataggttctccaaggatgcagccacttctggtccactttgagaatttaaatcttttgtcttcttcaagtatatgacaattaaatcaa |
215 |
Q |
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| T |
11365868 |
ggaaagtgatgaaataggttctccaaggatgcagccacttctggtccactttgagaatttaaatcttttgtcttcttcaagtatatgacaattaaatcaa |
11365769 |
T |
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| Q |
216 |
tgcagtgaagaatagatgtcaaacatccaaaagtcggctcatcaagccattctgtcgctgatggaatcaatcgttgaaaactatcaactaataatgggat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11365768 |
tgcagtgaagaatagatgtcaaacatccaaaagtcggctcatcaagccattctgtcgctgatggaatcaatcgttgaaaactatcaactaataatgggat |
11365669 |
T |
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| Q |
316 |
taaatccttcatgttacgagataaacctacacacatagtaaataaa |
361 |
Q |
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| T |
11365668 |
taaatccttcatgttacgagataaacctacacacatagtaaataaa |
11365623 |
T |
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