View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_1D_low_22 (Length: 351)
Name: NF8208_1D_low_22
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_1D_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 5054413 - 5054075
Alignment:
| Q |
1 |
tgtcatgccggacaaactctcacccgcgtgtgattcatatgctttctccaaaacaactagctgccaccaactctcacatttcatataagatattggtaat |
100 |
Q |
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| T |
5054413 |
tgtcatgctggacaaactctcacccgcgtgtgattcatatgctttctccaaaacaactacctgccaccaactctcacatttcatataagatattggtaat |
5054314 |
T |
|
| Q |
101 |
tcacaacataggtgtagagttataaaatccttctactgtttgtttttaattttgccattctttttcttaaattcatcgttcgtaggtaaaagcaattctg |
200 |
Q |
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||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5054313 |
tcacaacataggt--agagttataaaattcatctactgtttgtttttaattttgccattctttttcttaaattcatcgttcgtaggtaaaagcaattctg |
5054216 |
T |
|
| Q |
201 |
tttacttttagaacatcttttgcctccagagacaaaaataatatcctatcctgttacttagtttctccttatttcattccaatttccatattattcgttc |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5054215 |
tttacttttagaacatattttgcctccagagacaaaaataatatcctatcctgttacttagtttctccttatttcattccaatttccatattattctttc |
5054116 |
T |
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| Q |
301 |
taagcatacatacatgtgttaaaatttcatgatgtccatct |
341 |
Q |
| |
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||||||||||||||||||||||||||||||| || |||||| |
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| T |
5054115 |
taagcatacatacatgtgttaaaatttcatgttggccatct |
5054075 |
T |
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