View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_1D_low_25 (Length: 329)
Name: NF8208_1D_low_25
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_1D_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 12 - 323
Target Start/End: Complemental strand, 37119888 - 37119577
Alignment:
| Q |
12 |
gttgcatggaatggtcagttcttcggctgttcttttctttgcttatattggctttgatgcagtttcaaccatggctgaagaaactaaaaaccctggtaga |
111 |
Q |
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| T |
37119888 |
gttgcatggaatggtcagttcttcggctgttcttttctttgcttatattggctttgatgctgtttcaaccatggctgaagaaactaaaaaccctggtaga |
37119789 |
T |
|
| Q |
112 |
gacattcctatcggtctagttggatcaatgacgattacaacagcaatatattgcttactagcagcaacactttgtcttatgcagaattacaaagaacttg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37119788 |
gacattcctatcggtctagttggatcaatgacgattacaacagcaatatattgcttactaggagcaacactttgtcttatgcagaattacaaagaacttg |
37119689 |
T |
|
| Q |
212 |
atactgatgctcctttctcagttgcttttagtgctgttggaatggattgggctaagtacattgtttcattaggtgctttgaaaggaatgacaacggtttt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37119688 |
atactgatgctcctttctcagttgcttttagtgctgttggaatggattgggctaagtacattgtttcattaggtgctttgaaaggaatgacaacggtttt |
37119589 |
T |
|
| Q |
312 |
gttggttagtgc |
323 |
Q |
| |
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|||||||||||| |
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| T |
37119588 |
gttggttagtgc |
37119577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 22 - 325
Target Start/End: Complemental strand, 37111623 - 37111320
Alignment:
| Q |
22 |
atggtcagttcttcggctgttcttttctttgcttatattggctttgatgcagtttcaaccatggctgaagaaactaaaaaccctggtagagacattccta |
121 |
Q |
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| T |
37111623 |
atggtcaatgcttccgctgtacttttctttgcttatgttggctttgatgctgtttcaaccatggctgaagaaaccaagaaccctggtagagacattccaa |
37111524 |
T |
|
| Q |
122 |
tcggtctagttggatcaatgacgattacaacagcaatatattgcttactagcagcaacactttgtcttatgcagaattacaaagaacttgatactgatgc |
221 |
Q |
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| T |
37111523 |
ttggtctagttggttcaatgacgattacaacaataatttattgcttactggcagcaacactgtgtcttatgcagaattacaaagaactaaatgttgatgc |
37111424 |
T |
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| Q |
222 |
tcctttctcagttgcttttagtgctgttggaatggattgggctaagtacattgtttcattaggtgctttgaaaggaatgacaacggttttgttggttagt |
321 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| || |
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| T |
37111423 |
tcctttctctgttgcttttagtgctgttggaatggattgggctaagtacattgtttcattaggcgctttaaaaggaatgacaacggttttgttggttggt |
37111324 |
T |
|
| Q |
322 |
gctg |
325 |
Q |
| |
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|||| |
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| T |
37111323 |
gctg |
37111320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 34 - 319
Target Start/End: Original strand, 37136387 - 37136672
Alignment:
| Q |
34 |
tcggctgttcttttctttgcttatattggctttgatgcagtttcaaccatggctgaagaaactaaaaaccctggtagagacattcctatcggtctagttg |
133 |
Q |
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||||||||||||||||||||||| || |||||||||||||| ||||| ||||| || ||||||||||||||||| |||||||||||||| ||||| || | |
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| T |
37136387 |
tcggctgttcttttctttgcttacataggctttgatgcagtgtcaactatggccgaggaaactaaaaaccctggcagagacattcctattggtcttgtag |
37136486 |
T |
|
| Q |
134 |
gatcaatgacgattacaacagcaatatattgcttactagcagcaacactttgtcttatgcagaattacaaagaacttgatactgatgctcctttctcagt |
233 |
Q |
| |
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|||||||| |||| || |||||||||| ||||||| ||||||| || ||||||||||| |||||| | ||||| |||| || || || || |
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| T |
37136487 |
gatcaatggtaattatcactttcatatattgctcactagcaacaacactatgccttatgcagaactacaaaacaattgatgtcaatgcaccattttcggt |
37136586 |
T |
|
| Q |
234 |
tgcttttagtgctgttggaatggattgggctaagtacattgtttcattaggtgctttgaaaggaatgacaacggttttgttggtta |
319 |
Q |
| |
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||| |||||| |||||||| || |||||||| ||||||||| |||| || || ||||| |||||||| || ||||||||||||| |
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| T |
37136587 |
tgcatttagttctgttggatggggatgggctaaatacattgttgcattgggagcattgaagggaatgacgactgttttgttggtta |
37136672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 21597378 - 21597314
Alignment:
| Q |
77 |
caaccatggctgaagaaactaaaaaccctggtagagacattcctatcggtctagttggatcaatg |
141 |
Q |
| |
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|||| |||||||||||||||||||||||| |||||| || ||||| ||| || |||| |||||| |
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| T |
21597378 |
caactatggctgaagaaactaaaaacccttctagagatatacctattggtttaattggttcaatg |
21597314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 302
Target Start/End: Original strand, 10681104 - 10681162
Alignment:
| Q |
244 |
gctgttggaatggattgggctaagtacattgtttcattaggtgctttgaaaggaatgac |
302 |
Q |
| |
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|||||||||||| | ||||||||||| |||||| |||| ||||| |||||||||||||| |
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| T |
10681104 |
gctgttggaatgaaatgggctaagtatattgttgcatttggtgcattgaaaggaatgac |
10681162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 153
Target Start/End: Original strand, 10680912 - 10681013
Alignment:
| Q |
52 |
gcttatattggctttgatgcagtttcaaccatggctgaagaaactaaaaaccctggtagagacattcctatcggtctagttggatcaatgacgattacaa |
151 |
Q |
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|||||| |||| || ||||||||||| || |||||||| ||||| || || ||||| | ||| || ||||| |||||| | ||||||||||| |||||| |
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| T |
10680912 |
gcttatgttggattcgatgcagtttcgacaatggctgaggaaacgaagaatcctggaaaagatatccctattggtctaataggatcaatgacacttacaa |
10681011 |
T |
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| Q |
152 |
ca |
153 |
Q |
| |
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|| |
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| T |
10681012 |
ca |
10681013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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